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1NIP

CRYSTALLOGRAPHIC STRUCTURE OF THE NITROGENASE IRON PROTEIN FROM AZOTOBACTER VINELANDII

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0009399biological_processnitrogen fixation
A0016163molecular_functionnitrogenase activity
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
B0005524molecular_functionATP binding
B0009399biological_processnitrogen fixation
B0016163molecular_functionnitrogenase activity
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
B0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 291
ChainResidue
AGLY14
ASER16
AHOH5011
AHOH5013
BADP292
BHOH5012
BHOH5014

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 291
ChainResidue
BGLY14
BSER16
BHOH5025
BHOH5026
BHOH5027
BHOH5028

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SF4 B 290
ChainResidue
ACYS97
AALA98
ACYS132
AGLY133
AGLY134
BCYS97
BALA98
BCYS132
BGLY134
BPHE135

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ADP B 292
ChainResidue
AGLY11
AGLY12
AILE13
ALYS41
AALA42
AMG291
AHOH5013
BLYS10
BGLY11
BGLY128
BASP129
BMET156
BALA160
BHOH298
BHOH5012
BHOH5014

site_idATP
Number of Residues4
DetailsA POSSIBLE SITE FOR ATP HYDROLYSIS
ChainResidue
AASP39
AASP43
BASP39
BASP43

site_idFES
Number of Residues4
DetailsTHE 4S-FE CLUSTER
ChainResidue
ACYS97
ACYS132
BCYS97
BCYS132

site_idWMA
Number of Residues16
DetailsWALKER A MOTIF
ChainResidue
AGLY14
ALYS15
ASER16
BGLY9
BLYS10
BGLY11
BGLY12
BILE13
BGLY14
BLYS15
BSER16
AGLY9
ALYS10
AGLY11
AGLY12
AILE13

site_idWMB
Number of Residues2
DetailsWALKER B MOTIF
ChainResidue
AASP125
BASP125

Functional Information from PROSITE/UniProt
site_idPS00692
Number of Residues14
DetailsNIFH_FRXC_2 NifH/frxC family signature 2. DvLGDVVCGGFAmP
ChainResidueDetails
AASP125-PRO138

site_idPS00746
Number of Residues13
DetailsNIFH_FRXC_1 NifH/frxC family signature 1. EsGGPepGvGCAG
ChainResidueDetails
AGLU87-GLY99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING:
ChainResidueDetails
ALYS10
AALA98
AGLY133
BLYS10
BALA98
BGLY133

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: ADP-ribosylarginine; by dinitrogenase reductase ADP-ribosyltransferase => ECO:0000250
ChainResidueDetails
AGLY101
BGLY101

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
ALYS15
AGLY12

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1f48
ChainResidueDetails
BLYS15
BGLY12

site_idMCSA1
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
AGLY11electrostatic stabiliser, hydrogen bond donor
ASER16electrostatic stabiliser, hydrogen bond donor
AALA42electrostatic stabiliser, hydrogen bond donor
AVAL130hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
BGLY11electrostatic stabiliser, hydrogen bond donor
BSER16electrostatic stabiliser, hydrogen bond donor
BALA42electrostatic stabiliser, hydrogen bond donor
BVAL130hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

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PDB entries from 2024-08-14

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