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1NF6

X-ray structure of the Desulfovibrio desulfuricans bacterioferritin: the diiron site in different catalytic states ("cycled" structure: reduced in solution and allowed to reoxidise before crystallisation)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003674molecular_functionmolecular_function
A0004322molecular_functionferroxidase activity
A0005506molecular_functioniron ion binding
A0005575cellular_componentcellular_component
A0005829cellular_componentcytosol
A0006826biological_processiron ion transport
A0006879biological_processintracellular iron ion homeostasis
A0006880biological_processintracellular sequestering of iron ion
A0008199molecular_functionferric iron binding
A0016491molecular_functionoxidoreductase activity
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
B0003674molecular_functionmolecular_function
B0004322molecular_functionferroxidase activity
B0005506molecular_functioniron ion binding
B0005575cellular_componentcellular_component
B0005829cellular_componentcytosol
B0006826biological_processiron ion transport
B0006879biological_processintracellular iron ion homeostasis
B0006880biological_processintracellular sequestering of iron ion
B0008199molecular_functionferric iron binding
B0016491molecular_functionoxidoreductase activity
B0020037molecular_functionheme binding
B0046872molecular_functionmetal ion binding
C0003674molecular_functionmolecular_function
C0004322molecular_functionferroxidase activity
C0005506molecular_functioniron ion binding
C0005575cellular_componentcellular_component
C0005829cellular_componentcytosol
C0006826biological_processiron ion transport
C0006879biological_processintracellular iron ion homeostasis
C0006880biological_processintracellular sequestering of iron ion
C0008199molecular_functionferric iron binding
C0016491molecular_functionoxidoreductase activity
C0020037molecular_functionheme binding
C0046872molecular_functionmetal ion binding
D0003674molecular_functionmolecular_function
D0004322molecular_functionferroxidase activity
D0005506molecular_functioniron ion binding
D0005575cellular_componentcellular_component
D0005829cellular_componentcytosol
D0006826biological_processiron ion transport
D0006879biological_processintracellular iron ion homeostasis
D0006880biological_processintracellular sequestering of iron ion
D0008199molecular_functionferric iron binding
D0016491molecular_functionoxidoreductase activity
D0020037molecular_functionheme binding
D0046872molecular_functionmetal ion binding
E0003674molecular_functionmolecular_function
E0004322molecular_functionferroxidase activity
E0005506molecular_functioniron ion binding
E0005575cellular_componentcellular_component
E0005829cellular_componentcytosol
E0006826biological_processiron ion transport
E0006879biological_processintracellular iron ion homeostasis
E0006880biological_processintracellular sequestering of iron ion
E0008199molecular_functionferric iron binding
E0016491molecular_functionoxidoreductase activity
E0020037molecular_functionheme binding
E0046872molecular_functionmetal ion binding
F0003674molecular_functionmolecular_function
F0004322molecular_functionferroxidase activity
F0005506molecular_functioniron ion binding
F0005575cellular_componentcellular_component
F0005829cellular_componentcytosol
F0006826biological_processiron ion transport
F0006879biological_processintracellular iron ion homeostasis
F0006880biological_processintracellular sequestering of iron ion
F0008199molecular_functionferric iron binding
F0016491molecular_functionoxidoreductase activity
F0020037molecular_functionheme binding
F0046872molecular_functionmetal ion binding
G0003674molecular_functionmolecular_function
G0004322molecular_functionferroxidase activity
G0005506molecular_functioniron ion binding
G0005575cellular_componentcellular_component
G0005829cellular_componentcytosol
G0006826biological_processiron ion transport
G0006879biological_processintracellular iron ion homeostasis
G0006880biological_processintracellular sequestering of iron ion
G0008199molecular_functionferric iron binding
G0016491molecular_functionoxidoreductase activity
G0020037molecular_functionheme binding
G0046872molecular_functionmetal ion binding
H0003674molecular_functionmolecular_function
H0004322molecular_functionferroxidase activity
H0005506molecular_functioniron ion binding
H0005575cellular_componentcellular_component
H0005829cellular_componentcytosol
H0006826biological_processiron ion transport
H0006879biological_processintracellular iron ion homeostasis
H0006880biological_processintracellular sequestering of iron ion
H0008199molecular_functionferric iron binding
H0016491molecular_functionoxidoreductase activity
H0020037molecular_functionheme binding
H0046872molecular_functionmetal ion binding
I0003674molecular_functionmolecular_function
I0004322molecular_functionferroxidase activity
I0005506molecular_functioniron ion binding
I0005575cellular_componentcellular_component
I0005829cellular_componentcytosol
I0006826biological_processiron ion transport
I0006879biological_processintracellular iron ion homeostasis
I0006880biological_processintracellular sequestering of iron ion
I0008199molecular_functionferric iron binding
I0016491molecular_functionoxidoreductase activity
I0020037molecular_functionheme binding
I0046872molecular_functionmetal ion binding
J0003674molecular_functionmolecular_function
J0004322molecular_functionferroxidase activity
J0005506molecular_functioniron ion binding
J0005575cellular_componentcellular_component
J0005829cellular_componentcytosol
J0006826biological_processiron ion transport
J0006879biological_processintracellular iron ion homeostasis
J0006880biological_processintracellular sequestering of iron ion
J0008199molecular_functionferric iron binding
J0016491molecular_functionoxidoreductase activity
J0020037molecular_functionheme binding
J0046872molecular_functionmetal ion binding
K0003674molecular_functionmolecular_function
K0004322molecular_functionferroxidase activity
K0005506molecular_functioniron ion binding
K0005575cellular_componentcellular_component
K0005829cellular_componentcytosol
K0006826biological_processiron ion transport
K0006879biological_processintracellular iron ion homeostasis
K0006880biological_processintracellular sequestering of iron ion
K0008199molecular_functionferric iron binding
K0016491molecular_functionoxidoreductase activity
K0020037molecular_functionheme binding
K0046872molecular_functionmetal ion binding
L0003674molecular_functionmolecular_function
L0004322molecular_functionferroxidase activity
L0005506molecular_functioniron ion binding
L0005575cellular_componentcellular_component
L0005829cellular_componentcytosol
L0006826biological_processiron ion transport
L0006879biological_processintracellular iron ion homeostasis
L0006880biological_processintracellular sequestering of iron ion
L0008199molecular_functionferric iron binding
L0016491molecular_functionoxidoreductase activity
L0020037molecular_functionheme binding
L0046872molecular_functionmetal ion binding
M0003674molecular_functionmolecular_function
M0004322molecular_functionferroxidase activity
M0005506molecular_functioniron ion binding
M0005575cellular_componentcellular_component
M0005829cellular_componentcytosol
M0006826biological_processiron ion transport
M0006879biological_processintracellular iron ion homeostasis
M0006880biological_processintracellular sequestering of iron ion
M0008199molecular_functionferric iron binding
M0016491molecular_functionoxidoreductase activity
M0020037molecular_functionheme binding
M0046872molecular_functionmetal ion binding
N0003674molecular_functionmolecular_function
N0004322molecular_functionferroxidase activity
N0005506molecular_functioniron ion binding
N0005575cellular_componentcellular_component
N0005829cellular_componentcytosol
N0006826biological_processiron ion transport
N0006879biological_processintracellular iron ion homeostasis
N0006880biological_processintracellular sequestering of iron ion
N0008199molecular_functionferric iron binding
N0016491molecular_functionoxidoreductase activity
N0020037molecular_functionheme binding
N0046872molecular_functionmetal ion binding
O0003674molecular_functionmolecular_function
O0004322molecular_functionferroxidase activity
O0005506molecular_functioniron ion binding
O0005575cellular_componentcellular_component
O0005829cellular_componentcytosol
O0006826biological_processiron ion transport
O0006879biological_processintracellular iron ion homeostasis
O0006880biological_processintracellular sequestering of iron ion
O0008199molecular_functionferric iron binding
O0016491molecular_functionoxidoreductase activity
O0020037molecular_functionheme binding
O0046872molecular_functionmetal ion binding
P0003674molecular_functionmolecular_function
P0004322molecular_functionferroxidase activity
P0005506molecular_functioniron ion binding
P0005575cellular_componentcellular_component
P0005829cellular_componentcytosol
P0006826biological_processiron ion transport
P0006879biological_processintracellular iron ion homeostasis
P0006880biological_processintracellular sequestering of iron ion
P0008199molecular_functionferric iron binding
P0016491molecular_functionoxidoreductase activity
P0020037molecular_functionheme binding
P0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE A 200
ChainResidue
AGLU56
AGLU99
AGLU132
AHIS135

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1001
ChainResidue
ALYS50
ASER162
ATHR164
AGLY165

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 1003
ChainResidue
AASN148
ASER144

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1004
ChainResidue
ALYS114
ALYS114
ALYS114
AHOH1109
AHOH1109

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE B 200
ChainResidue
BGLU56
BGLU99
BGLU132
BHIS135

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1201
ChainResidue
AFEC1005
BLYS50
BTHR164
BHOH1279
BHOH1313

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 N 1204
ChainResidue
BLYS114
GLYS114
NLYS114

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE C 200
ChainResidue
CGLU56
CGLU99
CGLU132
CHIS135

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C 1302
ChainResidue
CASN4
CARG5

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 1304
ChainResidue
CLYS114
CLYS114
CLYS114

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE D 200
ChainResidue
DGLU56
DGLU99
DGLU132
DHIS135

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 1401
ChainResidue
CFEC1305
CHOH9387
DLYS50
DTHR164
DHOH340
DHOH9590
DHOH9719

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 E 1404
ChainResidue
ELYS114
OLYS114

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE E 200
ChainResidue
EGLU56
EGLU99
EGLU132
EHIS135

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 E 1501
ChainResidue
ELYS50
ESER163
ETHR164
EHOH9340
EHOH9375
FFEC1604
FHOH9712

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE F 200
ChainResidue
FGLU56
FGLU99
FGLU132
FHIS135

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 F 1601
ChainResidue
FLYS50
FSER163
FTHR164
FGLY165
FHOH478

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 F 1603
ChainResidue
FSER144
FASN148

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 K 1604
ChainResidue
KLYS114
PLYS114

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE G 200
ChainResidue
GGLU56
GGLU99
GGLU132
GHIS135

site_idCC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 G 1701
ChainResidue
GLYS50
GSER162
GSER163
GTHR164
GFEC1704
GHOH1757
GHOH1799

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 G 1703
ChainResidue
GSER144
GASN148
GHOH1805

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE H 200
ChainResidue
HGLU56
HGLU99
HGLU132
HHIS135

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 1801
ChainResidue
HLYS50
HSER163
HTHR164
HGLY165

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 H 1802
ChainResidue
HASN4
HARG5
HHOH721

site_idCC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 I 1804
ChainResidue
ILYS114
MLYS114
HLYS114

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE I 200
ChainResidue
IGLU56
IGLU99
IGLU132
IHIS135

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 I 1901
ChainResidue
ILYS50
ITHR164
IGLY165
IHOH830
IHOH915

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 I 1902
ChainResidue
IASN4
IARG5
LASN4
LARG5
LHOH8969

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE J 200
ChainResidue
JGLU56
JGLU99
JGLU132
JHIS135

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 J 2001
ChainResidue
IFEC1903
JLYS50
JTHR164
JGLY165
JHOH9689
JHOH9739

site_idDC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 J 2004
ChainResidue
JLYS114
JLYS114
JLYS114

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE K 200
ChainResidue
KGLU56
KGLU99
KGLU132
KHIS135

site_idDC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 K 2101
ChainResidue
KLYS50
KTHR164
LHOH9662

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 K 2102
ChainResidue
KASN4
KARG5

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 K 2103
ChainResidue
KSER144
KASN148

site_idEC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE L 200
ChainResidue
LGLU56
LGLU99
LGLU132
LHIS135

site_idEC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 L 2201
ChainResidue
LLYS50
LSER162
LTHR164
LGLY165
LHOH978

site_idEC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 L 2204
ChainResidue
LLYS114
LLYS114
LLYS114

site_idEC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE M 200
ChainResidue
MGLU56
MGLU99
MGLU132
MHIS135

site_idEC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 M 2301
ChainResidue
MLYS50
MSER163
MTHR164
MHOH9120
MHOH9711
NFEC2403

site_idEC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 M 2302
ChainResidue
MASN4
MARG5

site_idEC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 M 2303
ChainResidue
LVAL90
MSER144
MLYS147
MASN148

site_idEC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE N 200
ChainResidue
NGLU56
NGLU99
NGLU132
NHIS135

site_idEC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 N 2401
ChainResidue
NLYS50
NSER162
NSER163
NTHR164
NHOH9070

site_idFC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 N 2402
ChainResidue
NASN4
NARG5
NHOH750

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE O 200
ChainResidue
OGLU56
OGLU99
OGLU132
OHIS135

site_idFC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 O 2501
ChainResidue
OLYS50
OSER163
OTHR164
OFEC2502

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FE P 200
ChainResidue
PGLU56
PGLU99
PGLU132
PHIS135

site_idFC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 P 2601
ChainResidue
OFEC2502
PLYS50
PSER163
PTHR164
PHOH9329
PHOH9466
PHOH9668

site_idFC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE FEC A 1005
ChainResidue
AARG20
AMET31
ATYR35
ALYS50
AMET57
AGLU61
ASER168
ALYS169
AHOH1016
AHOH1018
AHOH1098
AHOH1119
AHOH1122
BARG20
BHIS28
BMET31
BTYR35
BLYS50
BMET57
BGLU61
BALA167
BSER168
BSO41201

site_idFC7
Number of Residues24
DetailsBINDING SITE FOR RESIDUE FEC C 1305
ChainResidue
CARG20
CILE27
CMET31
CTYR35
CLYS50
CMET57
CARG58
CALA60
CGLU61
CSER168
CLYS169
CHOH322
CHOH324
DARG20
DILE27
DMET31
DTYR35
DLYS50
DMET57
DGLU61
DALA167
DSER168
DLYS169
DSO41401

site_idFC8
Number of Residues25
DetailsBINDING SITE FOR RESIDUE FEC F 1604
ChainResidue
EARG20
EMET31
ETYR35
ELYS50
EILE54
EMET57
EGLU61
ESER168
ESO41501
FARG20
FILE27
FHIS28
FMET31
FTYR35
FLYS50
FMET57
FARG58
FGLU61
FALA167
FSER168
FLYS169
FHOH460
FHOH462
FHOH9471
FHOH9712

site_idFC9
Number of Residues24
DetailsBINDING SITE FOR RESIDUE FEC G 1704
ChainResidue
GARG20
GLEU24
GHIS28
GMET31
GTYR35
GLYS50
GMET57
GARG58
GGLU61
GSER168
GLYS169
GSO41701
GHOH1719
GHOH1811
GHOH1833
HARG20
HHIS28
HTYR35
HLYS50
HMET57
HGLU61
HSER168
HHOH605
HHOH9612

site_idGC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE FEC I 1903
ChainResidue
IARG20
IHIS28
IMET31
ITYR35
ILYS50
IMET57
IARG58
IGLU61
ISER168
ILYS169
IHOH769
IHOH9544
IHOH9560
JARG20
JMET31
JTYR35
JLYS50
JMET57
JGLU61
JSER168
JLYS169
JHOH766
JSO42001
JHOH9558
JHOH9689

site_idGC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE FEC K 2104
ChainResidue
KARG20
KHIS28
KMET31
KTYR35
KLYS50
KMET57
KGLU61
KSER168
KLYS169
KHOH955
KHOH957
LARG20
LMET31
LTYR35
LLYS50
LMET57
LGLU61
LSER168
LLYS169

site_idGC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE FEC N 2403
ChainResidue
MARG20
MILE27
MHIS28
MMET31
MTYR35
MLYS50
MILE54
MMET57
MGLU61
MSER168
MSO42301
MHOH9691
NARG20
NILE27
NHIS28
NMET31
NTYR35
NLYS50
NMET57
NGLU61
NSER168
NLYS169
NHOH9048
NHOH9051
NHOH9532
NHOH9619
NHOH9699

site_idGC4
Number of Residues23
DetailsBINDING SITE FOR RESIDUE FEC O 2502
ChainResidue
OARG20
OILE27
OMET31
OTYR35
OLYS50
OMET57
OARG58
OGLU61
OALA167
OSER168
OLYS169
OSO42501
OHOH9231
PARG20
PMET31
PTYR35
PLYS50
PMET57
PGLU61
PSER168
PLYS169
PSO42601
PHOH9233

site_idGC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL P 2615
ChainResidue
KGLU104
PARG5
PARG8
PLYS9
PVAL12
PASP118
PHOH8947
PHOH9259
PHOH9786

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues96
DetailsBINDING:
ChainResidueDetails
AGLU23
BGLU99
BGLU132
BHIS135
CGLU23
CGLU56
CHIS59
CGLU99
CGLU132
CHIS135
DGLU23
AGLU56
DGLU56
DHIS59
DGLU99
DGLU132
DHIS135
EGLU23
EGLU56
EHIS59
EGLU99
EGLU132
AHIS59
EHIS135
FGLU23
FGLU56
FHIS59
FGLU99
FGLU132
FHIS135
GGLU23
GGLU56
GHIS59
AGLU99
GGLU99
GGLU132
GHIS135
HGLU23
HGLU56
HHIS59
HGLU99
HGLU132
HHIS135
IGLU23
AGLU132
IGLU56
IHIS59
IGLU99
IGLU132
IHIS135
JGLU23
JGLU56
JHIS59
JGLU99
JGLU132
AHIS135
JHIS135
KGLU23
KGLU56
KHIS59
KGLU99
KGLU132
KHIS135
LGLU23
LGLU56
LHIS59
BGLU23
LGLU99
LGLU132
LHIS135
MGLU23
MGLU56
MHIS59
MGLU99
MGLU132
MHIS135
NGLU23
BGLU56
NGLU56
NHIS59
NGLU99
NGLU132
NHIS135
OGLU23
OGLU56
OHIS59
OGLU99
OGLU132
BHIS59
OHIS135
PGLU23
PGLU56
PHIS59
PGLU99
PGLU132
PHIS135

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: axial binding residue
ChainResidueDetails
AMET57
JMET57
KMET57
LMET57
MMET57
NMET57
OMET57
PMET57
BMET57
CMET57
DMET57
EMET57
FMET57
GMET57
HMET57
IMET57

218196

PDB entries from 2024-04-10

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