Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1N5J

CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS THYMIDYLATE KINASE COMPLEXED WITH THYMIDINE DIPHOSPHATE (TDP) AND THYMIDINE TRIPHOSPHATE (TTP) AT PH 5.4 (1.85 A RESOLUTION)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004798molecular_functionthymidylate kinase activity
A0005524molecular_functionATP binding
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006227biological_processdUDP biosynthetic process
A0006233biological_processdTDP biosynthetic process
A0006235biological_processdTTP biosynthetic process
A0009165biological_processnucleotide biosynthetic process
A0016301molecular_functionkinase activity
A0042803molecular_functionprotein homodimerization activity
A0046044biological_processTMP metabolic process
A0046872molecular_functionmetal ion binding
A0046940biological_processnucleoside monophosphate phosphorylation
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 217
ChainResidue
AASP9
AGLU166
ATYD218
ATTP219
AHOH1009
AHOH1018

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 215
ChainResidue
AARG14
AARG153
AHOH1014
AHOH1027
AHOH1041
AHOH1140
AGLY10
AGLY12
ALYS13

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 216
ChainResidue
AALA154
AARG162
AARG167
AHOH1030

site_idAC4
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TTP A 219
ChainResidue
AASP9
AARG14
APRO37
ATYR39
APHE70
AARG74
AARG95
AASN100
ATYR103
ATYR165
AMG217
AHOH1002
AHOH1009
AHOH1014
AHOH1018
AHOH1046
AHOH1119
AHOH1128
AHOH1140
AHOH1151
AHOH1234

site_idAC5
Number of Residues17
DetailsBINDING SITE FOR RESIDUE TYD A 218
ChainResidue
AASP9
ATYR39
APHE70
AARG74
AARG95
AASN100
ATYR165
AGLU166
AMG217
AHOH1002
AHOH1009
AHOH1014
AHOH1018
AHOH1046
AHOH1119
AHOH1151
AHOH1234

Functional Information from PROSITE/UniProt
site_idPS01331
Number of Residues13
DetailsTHYMIDYLATE_KINASE Thymidylate kinase signature. ILDRYvaSNaAYS
ChainResidueDetails
AILE92-SER104

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsBINDING:
ChainResidueDetails
AGLY7
ATYR165
AGLU166
AASP9
ATYR39
APHE70
AARG74
AARG95
AASN100
ATYR103
AASP163

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Transition state stabilizer => ECO:0000255
ChainResidueDetails
AARG153

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon