1N1B
Crystal Structure of (+)-Bornyl Diphosphate Synthase from Sage
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0009507 | cellular_component | chloroplast |
A | 0010333 | molecular_function | terpene synthase activity |
A | 0016102 | biological_process | diterpenoid biosynthetic process |
A | 0016829 | molecular_function | lyase activity |
A | 0016853 | molecular_function | isomerase activity |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0046211 | biological_process | (+)-camphor biosynthetic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0047926 | molecular_function | geranyl-diphosphate cyclase activity |
A | 0102703 | molecular_function | camphene synthase activity |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0009507 | cellular_component | chloroplast |
B | 0010333 | molecular_function | terpene synthase activity |
B | 0016102 | biological_process | diterpenoid biosynthetic process |
B | 0016829 | molecular_function | lyase activity |
B | 0016853 | molecular_function | isomerase activity |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0046211 | biological_process | (+)-camphor biosynthetic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0047926 | molecular_function | geranyl-diphosphate cyclase activity |
B | 0102703 | molecular_function | camphene synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 901 |
Chain | Residue |
B | ASP351 |
B | ASP355 |
B | HOH1006 |
B | HOH1211 |
B | HOH1212 |
B | HOH1213 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 902 |
Chain | Residue |
A | HOH1173 |
A | HOH1174 |
A | HOH1175 |
A | ASP351 |
A | ASP355 |
A | HOH1172 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE HG A 903 |
Chain | Residue |
A | TYR481 |
A | ASP483 |
A | CYS486 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE HG A 904 |
Chain | Residue |
A | PHE306 |
A | VAL349 |
A | CYS388 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE HG A 906 |
Chain | Residue |
A | CYS221 |
A | HG907 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE HG A 907 |
Chain | Residue |
A | CYS221 |
A | LEU222 |
A | LYS225 |
A | HG906 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE HG A 908 |
Chain | Residue |
A | CYS139 |
A | GLU144 |
A | VAL171 |
A | CYS174 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE HG B 909 |
Chain | Residue |
B | TYR481 |
B | ASP483 |
B | CYS486 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE HG B 910 |
Chain | Residue |
B | TYR384 |
B | CYS388 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE HG B 911 |
Chain | Residue |
B | PHE306 |
B | VAL349 |
B | CYS388 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE HG B 913 |
Chain | Residue |
B | ALA188 |
B | CYS221 |
B | HG914 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE HG B 914 |
Chain | Residue |
B | CYS221 |
B | LEU222 |
B | HG913 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE HG B 915 |
Chain | Residue |
B | CYS139 |
B | GLU144 |
B | VAL171 |
B | CYS174 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000269|PubMed:12432096, ECO:0007744|PDB:1N1Z |
Chain | Residue | Details |
A | ARG314 | |
B | ASP351 | |
B | ASP355 | |
B | ARG493 | |
B | ASP496 | |
B | THR500 | |
B | GLU504 | |
B | LYS512 | |
A | ASP351 | |
A | ASP355 | |
A | ARG493 | |
A | ASP496 | |
A | THR500 | |
A | GLU504 | |
A | LYS512 | |
B | ARG314 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1n20 |
Chain | Residue | Details |
A | PHE578 | |
A | TRP323 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1n20 |
Chain | Residue | Details |
B | PHE578 | |
B | TRP323 |
site_id | MCSA1 |
Number of Residues | 9 |
Details | M-CSA 259 |
Chain | Residue | Details |
A | TRP323 | electrostatic stabiliser, polar/non-polar interaction, steric role, van der waals interaction |
A | ILE344 | steric role, van der waals interaction |
A | ASP351 | metal ligand |
A | ASP355 | metal ligand |
A | VAL452 | steric role, van der waals interaction |
A | ASP496 | metal ligand |
A | THR500 | metal ligand |
A | GLU504 | metal ligand |
A | PHE578 | electrostatic stabiliser, polar/non-polar interaction, steric role, van der waals interaction |
site_id | MCSA2 |
Number of Residues | 9 |
Details | M-CSA 259 |
Chain | Residue | Details |
B | TRP323 | electrostatic stabiliser, polar/non-polar interaction, steric role, van der waals interaction |
B | ILE344 | steric role, van der waals interaction |
B | ASP351 | metal ligand |
B | ASP355 | metal ligand |
B | VAL452 | steric role, van der waals interaction |
B | ASP496 | metal ligand |
B | THR500 | metal ligand |
B | GLU504 | metal ligand |
B | PHE578 | electrostatic stabiliser, polar/non-polar interaction, steric role, van der waals interaction |