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1MVX

structure of the SET domain histone lysine methyltransferase Clr4

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0042054molecular_functionhistone methyltransferase activity
A0046974molecular_functionhistone H3K9 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 601
ChainResidue
AGLN257
AASN308
ASER309
AARG423

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
ACYS260
ACYS278
ACYS307
ACYS311

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
ACYS307
ACYS313
ACYS317
ACYS268

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 503
ChainResidue
ACYS260
ACYS262
ACYS268
ACYS276

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NI A 504
ChainResidue
AARG206
AARG206
AARG210
AARG210

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues67
DetailsDomain: {"description":"Pre-SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00157","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues124
DetailsDomain: {"description":"SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00190","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"12389037","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30051891","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30051891","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00190","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; by autocatalysis; alternate","evidences":[{"source":"PubMed","id":"30051891","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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