1MT1
The Crystal Structure of Pyruvoyl-dependent Arginine Decarboxylase from Methanococcus jannaschii
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006520 | biological_process | amino acid metabolic process |
| A | 0006527 | biological_process | arginine catabolic process |
| A | 0008792 | molecular_function | arginine decarboxylase activity |
| A | 0016831 | molecular_function | carboxy-lyase activity |
| B | 0006520 | biological_process | amino acid metabolic process |
| B | 0006527 | biological_process | arginine catabolic process |
| B | 0008792 | molecular_function | arginine decarboxylase activity |
| B | 0016831 | molecular_function | carboxy-lyase activity |
| C | 0006520 | biological_process | amino acid metabolic process |
| C | 0006527 | biological_process | arginine catabolic process |
| C | 0008792 | molecular_function | arginine decarboxylase activity |
| C | 0016831 | molecular_function | carboxy-lyase activity |
| D | 0006520 | biological_process | amino acid metabolic process |
| D | 0006527 | biological_process | arginine catabolic process |
| D | 0008792 | molecular_function | arginine decarboxylase activity |
| D | 0016831 | molecular_function | carboxy-lyase activity |
| E | 0006520 | biological_process | amino acid metabolic process |
| E | 0006527 | biological_process | arginine catabolic process |
| E | 0008792 | molecular_function | arginine decarboxylase activity |
| E | 0016831 | molecular_function | carboxy-lyase activity |
| F | 0006520 | biological_process | amino acid metabolic process |
| F | 0006527 | biological_process | arginine catabolic process |
| F | 0008792 | molecular_function | arginine decarboxylase activity |
| F | 0016831 | molecular_function | carboxy-lyase activity |
| G | 0006520 | biological_process | amino acid metabolic process |
| G | 0006527 | biological_process | arginine catabolic process |
| G | 0008792 | molecular_function | arginine decarboxylase activity |
| G | 0016831 | molecular_function | carboxy-lyase activity |
| H | 0006520 | biological_process | amino acid metabolic process |
| H | 0006527 | biological_process | arginine catabolic process |
| H | 0008792 | molecular_function | arginine decarboxylase activity |
| H | 0016831 | molecular_function | carboxy-lyase activity |
| I | 0006520 | biological_process | amino acid metabolic process |
| I | 0006527 | biological_process | arginine catabolic process |
| I | 0008792 | molecular_function | arginine decarboxylase activity |
| I | 0016831 | molecular_function | carboxy-lyase activity |
| J | 0006520 | biological_process | amino acid metabolic process |
| J | 0006527 | biological_process | arginine catabolic process |
| J | 0008792 | molecular_function | arginine decarboxylase activity |
| J | 0016831 | molecular_function | carboxy-lyase activity |
| K | 0006520 | biological_process | amino acid metabolic process |
| K | 0006527 | biological_process | arginine catabolic process |
| K | 0008792 | molecular_function | arginine decarboxylase activity |
| K | 0016831 | molecular_function | carboxy-lyase activity |
| L | 0006520 | biological_process | amino acid metabolic process |
| L | 0006527 | biological_process | arginine catabolic process |
| L | 0008792 | molecular_function | arginine decarboxylase activity |
| L | 0016831 | molecular_function | carboxy-lyase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE AG2 B 7001 |
| Chain | Residue |
| A | SER52 |
| C | VAL46 |
| B | PYR53 |
| B | ILE107 |
| B | MSE108 |
| B | GLU109 |
| C | LEU31 |
| C | ASP35 |
| C | LEU38 |
| C | GLY44 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE AG2 K 7002 |
| Chain | Residue |
| G | SER52 |
| H | PYR53 |
| H | ILE107 |
| H | GLU109 |
| K | LEU31 |
| K | ASP35 |
| K | LEU38 |
| K | GLY44 |
| K | VAL46 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE AG2 G 7003 |
| Chain | Residue |
| G | LEU31 |
| G | ASP35 |
| G | LEU38 |
| G | GLY44 |
| G | VAL46 |
| I | SER52 |
| J | PYR53 |
| J | ILE107 |
| site_id | AC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE AG2 C 7004 |
| Chain | Residue |
| C | SER52 |
| D | PYR53 |
| D | ILE107 |
| E | LEU31 |
| E | ASP35 |
| E | LEU38 |
| E | VAL46 |
| E | HOH71 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE AG2 A 7005 |
| Chain | Residue |
| A | ASP35 |
| A | LEU38 |
| A | GLY44 |
| A | VAL46 |
| E | SER52 |
| F | PYR53 |
| F | ILE107 |
| F | GLU109 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | SITE: Cleavage (non-hydrolytic) |
| Chain | Residue | Details |
| A | SER52 | |
| C | SER52 | |
| E | SER52 | |
| G | SER52 | |
| I | SER52 | |
| K | SER52 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details |
| Chain | Residue | Details |
| B | GLU109 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details |
| Chain | Residue | Details |
| D | GLU109 |
| site_id | CSA3 |
| Number of Residues | 1 |
| Details |
| Chain | Residue | Details |
| F | GLU109 |
| site_id | CSA4 |
| Number of Residues | 1 |
| Details |
| Chain | Residue | Details |
| H | GLU109 |
| site_id | CSA5 |
| Number of Residues | 1 |
| Details |
| Chain | Residue | Details |
| J | GLU109 |
| site_id | CSA6 |
| Number of Residues | 1 |
| Details |
| Chain | Residue | Details |
| L | GLU109 |
| site_id | MCSA1 |
| Number of Residues | 1 |
| Details | M-CSA 707 |
| Chain | Residue | Details |
| B | GLU109 | proton shuttle (general acid/base) |
| A | SER52 |
| site_id | MCSA2 |
| Number of Residues | 1 |
| Details | M-CSA 707 |
| Chain | Residue | Details |
| D | GLU109 | proton shuttle (general acid/base) |
| C | SER52 |
| site_id | MCSA3 |
| Number of Residues | 1 |
| Details | M-CSA 707 |
| Chain | Residue | Details |
| F | GLU109 | proton shuttle (general acid/base) |
| E | SER52 |
| site_id | MCSA4 |
| Number of Residues | 1 |
| Details | M-CSA 707 |
| Chain | Residue | Details |
| H | GLU109 | proton shuttle (general acid/base) |
| G | SER52 |
| site_id | MCSA5 |
| Number of Residues | 1 |
| Details | M-CSA 707 |
| Chain | Residue | Details |
| J | GLU109 | proton shuttle (general acid/base) |
| I | SER52 |
| site_id | MCSA6 |
| Number of Residues | 1 |
| Details | M-CSA 707 |
| Chain | Residue | Details |
| L | GLU109 | proton shuttle (general acid/base) |
| K | SER52 |
