1MA9
Crystal structure of the complex of human vitamin D binding protein and rabbit muscle actin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003779 | molecular_function | actin binding |
A | 0005499 | molecular_function | vitamin D binding |
A | 0005576 | cellular_component | extracellular region |
A | 0005615 | cellular_component | extracellular space |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0035461 | biological_process | vitamin transmembrane transport |
A | 0042359 | biological_process | vitamin D metabolic process |
A | 0043202 | cellular_component | lysosomal lumen |
A | 0051180 | biological_process | vitamin transport |
A | 0070062 | cellular_component | extracellular exosome |
A | 0072562 | cellular_component | blood microparticle |
A | 0090482 | molecular_function | vitamin transmembrane transporter activity |
A | 1902118 | molecular_function | calcidiol binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0001725 | cellular_component | stress fiber |
B | 0003785 | molecular_function | actin monomer binding |
B | 0005509 | molecular_function | calcium ion binding |
B | 0005515 | molecular_function | protein binding |
B | 0005523 | molecular_function | tropomyosin binding |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005856 | cellular_component | cytoskeleton |
B | 0005865 | cellular_component | striated muscle thin filament |
B | 0005884 | cellular_component | actin filament |
B | 0010628 | biological_process | positive regulation of gene expression |
B | 0016787 | molecular_function | hydrolase activity |
B | 0019904 | molecular_function | protein domain specific binding |
B | 0030027 | cellular_component | lamellipodium |
B | 0030041 | biological_process | actin filament polymerization |
B | 0030175 | cellular_component | filopodium |
B | 0030240 | biological_process | skeletal muscle thin filament assembly |
B | 0031013 | molecular_function | troponin I binding |
B | 0031432 | molecular_function | titin binding |
B | 0031941 | cellular_component | filamentous actin |
B | 0032036 | molecular_function | myosin heavy chain binding |
B | 0032432 | cellular_component | actin filament bundle |
B | 0042802 | molecular_function | identical protein binding |
B | 0044297 | cellular_component | cell body |
B | 0048306 | molecular_function | calcium-dependent protein binding |
B | 0048741 | biological_process | skeletal muscle fiber development |
B | 0051017 | biological_process | actin filament bundle assembly |
B | 0090131 | biological_process | mesenchyme migration |
B | 0098723 | cellular_component | skeletal muscle myofibril |
B | 0140660 | molecular_function | cytoskeletal motor activator activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 376 |
Chain | Residue |
B | ATP377 |
B | HOH415 |
B | HOH493 |
B | HOH494 |
B | HOH495 |
site_id | AC2 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE ATP B 377 |
Chain | Residue |
B | LYS18 |
B | GLY156 |
B | ASP157 |
B | GLY158 |
B | VAL159 |
B | GLY182 |
B | ARG210 |
B | LYS213 |
B | GLU214 |
B | GLY301 |
B | GLY302 |
B | THR303 |
B | MET305 |
B | TYR306 |
B | LYS336 |
B | MG376 |
B | HOH384 |
B | HOH393 |
B | HOH399 |
B | HOH415 |
B | HOH422 |
B | HOH441 |
B | HOH475 |
B | HOH493 |
B | HOH494 |
B | HOH495 |
B | GLY13 |
B | SER14 |
B | GLY15 |
B | LEU16 |
Functional Information from PROSITE/UniProt
site_id | PS00212 |
Number of Residues | 25 |
Details | ALBUMIN_1 Albumin domain signature. YlsmvgsCCtsAsptvCFlkerlqL |
Chain | Residue | Details |
A | TYR166-LEU190 |
site_id | PS00406 |
Number of Residues | 11 |
Details | ACTINS_1 Actins signature 1. YVGDEAQs.KRG |
Chain | Residue | Details |
B | TYR53-GLY63 |
site_id | PS00432 |
Number of Residues | 9 |
Details | ACTINS_2 Actins signature 2. WITKqEYDE |
Chain | Residue | Details |
B | TRP356-GLU364 |
site_id | PS01132 |
Number of Residues | 13 |
Details | ACTINS_ACT_LIKE Actins and actin-related proteins signature. LLTEApLNPkaNR |
Chain | Residue | Details |
B | LEU104-ARG116 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | MOD_RES: N-acetylaspartate; in Actin, alpha skeletal muscle => ECO:0000269|PubMed:1150665 |
Chain | Residue | Details |
B | THR6 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | MOD_RES: Methionine (R)-sulfoxide => ECO:0000250|UniProtKB:P68134 |
Chain | Residue | Details |
B | GLN49 | |
B | SER52 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | MOD_RES: N6-malonyllysine => ECO:0000250 |
Chain | Residue | Details |
B | THR66 |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | MOD_RES: Tele-methylhistidine => ECO:0000269|PubMed:1150665, ECO:0000269|PubMed:16905096, ECO:0000269|PubMed:213279, ECO:0000269|PubMed:2395459, ECO:0000269|PubMed:499690, ECO:0007744|PDB:1ATN, ECO:0007744|PDB:1NWK |
Chain | Residue | Details |
B | ASN78 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | MOD_RES: N6-methyllysine => ECO:0000250|UniProtKB:P68133 |
Chain | Residue | Details |
B | THR89 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | MOD_RES: ADP-ribosylarginine; by SpvB => ECO:0000305|PubMed:16905096 |
Chain | Residue | Details |
B | GLY182 |