1M5Q
Crystal structure of a novel Sm-like archaeal protein from Pyrobaculum aerophilum
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| 1 | 0003723 | molecular_function | RNA binding |
| 1 | 1990904 | cellular_component | ribonucleoprotein complex |
| 2 | 0003723 | molecular_function | RNA binding |
| 2 | 1990904 | cellular_component | ribonucleoprotein complex |
| A | 0003723 | molecular_function | RNA binding |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0003723 | molecular_function | RNA binding |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0003723 | molecular_function | RNA binding |
| C | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0003723 | molecular_function | RNA binding |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0003723 | molecular_function | RNA binding |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
| F | 0003723 | molecular_function | RNA binding |
| F | 1990904 | cellular_component | ribonucleoprotein complex |
| G | 0003723 | molecular_function | RNA binding |
| G | 1990904 | cellular_component | ribonucleoprotein complex |
| H | 0003723 | molecular_function | RNA binding |
| H | 1990904 | cellular_component | ribonucleoprotein complex |
| I | 0003723 | molecular_function | RNA binding |
| I | 1990904 | cellular_component | ribonucleoprotein complex |
| J | 0003723 | molecular_function | RNA binding |
| J | 1990904 | cellular_component | ribonucleoprotein complex |
| K | 0003723 | molecular_function | RNA binding |
| K | 1990904 | cellular_component | ribonucleoprotein complex |
| L | 0003723 | molecular_function | RNA binding |
| L | 1990904 | cellular_component | ribonucleoprotein complex |
| M | 0003723 | molecular_function | RNA binding |
| M | 1990904 | cellular_component | ribonucleoprotein complex |
| N | 0003723 | molecular_function | RNA binding |
| N | 1990904 | cellular_component | ribonucleoprotein complex |
| O | 0003723 | molecular_function | RNA binding |
| O | 1990904 | cellular_component | ribonucleoprotein complex |
| P | 0003723 | molecular_function | RNA binding |
| P | 1990904 | cellular_component | ribonucleoprotein complex |
| Q | 0003723 | molecular_function | RNA binding |
| Q | 1990904 | cellular_component | ribonucleoprotein complex |
| R | 0003723 | molecular_function | RNA binding |
| R | 1990904 | cellular_component | ribonucleoprotein complex |
| S | 0003723 | molecular_function | RNA binding |
| S | 1990904 | cellular_component | ribonucleoprotein complex |
| T | 0003723 | molecular_function | RNA binding |
| T | 1990904 | cellular_component | ribonucleoprotein complex |
| U | 0003723 | molecular_function | RNA binding |
| U | 1990904 | cellular_component | ribonucleoprotein complex |
| V | 0003723 | molecular_function | RNA binding |
| V | 1990904 | cellular_component | ribonucleoprotein complex |
| W | 0003723 | molecular_function | RNA binding |
| W | 1990904 | cellular_component | ribonucleoprotein complex |
| X | 0003723 | molecular_function | RNA binding |
| X | 1990904 | cellular_component | ribonucleoprotein complex |
| Y | 0003723 | molecular_function | RNA binding |
| Y | 1990904 | cellular_component | ribonucleoprotein complex |
| Z | 0003723 | molecular_function | RNA binding |
| Z | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD A 2001 |
| Chain | Residue |
| A | HIS39 |
| A | HOH4034 |
| A | HOH4055 |
| B | GLU84 |
| B | HOH3008 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD B 2002 |
| Chain | Residue |
| B | HIS39 |
| B | HOH3003 |
| C | GLU84 |
| C | HOH194 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD D 2003 |
| Chain | Residue |
| C | HIS39 |
| C | HOH144 |
| C | HOH179 |
| D | GLU84 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD D 2004 |
| Chain | Residue |
| D | HIS39 |
| D | HOH2005 |
| E | GLU84 |
| E | HOH2029 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD E 2005 |
| Chain | Residue |
| E | HIS39 |
| E | HOH2008 |
| F | GLU84 |
| F | HOH5073 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD F 2006 |
| Chain | Residue |
| F | HIS39 |
| F | HOH5016 |
| F | HOH5049 |
| G | GLU84 |
| G | HOH4044 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD A 2007 |
| Chain | Residue |
| A | GLU84 |
| G | HIS39 |
| G | HOH4003 |
| G | HOH4058 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD H 2008 |
| Chain | Residue |
| H | HIS39 |
| H | GOL4002 |
| H | HOH5061 |
| I | GLU15 |
| I | HOH5064 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CD I 2009 |
| Chain | Residue |
| I | HIS39 |
| I | HOH5045 |
| J | GLU15 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CD J 2010 |
| Chain | Residue |
| J | HIS39 |
| J | HOH4010 |
| K | HOH5019 |
| site_id | BC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD K 2011 |
| Chain | Residue |
| D | LYS91 |
| K | HIS39 |
| K | HOH5020 |
| L | GLU15 |
| L | HOH2027 |
| site_id | BC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD L 2012 |
| Chain | Residue |
| L | HIS39 |
| L | HOH2016 |
| L | HOH2039 |
| L | HOH2058 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD M 2013 |
| Chain | Residue |
| M | HIS39 |
| M | HOH5014 |
| M | HOH5025 |
| M | HOH5101 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CD H 2014 |
| Chain | Residue |
| H | GLU15 |
| N | HIS39 |
| N | HOH5038 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD P 2015 |
| Chain | Residue |
| O | HIS39 |
| O | HOH2023 |
| O | HOH2079 |
| P | GLU84 |
| P | HOH2057 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD P 2016 |
| Chain | Residue |
| P | HIS39 |
| P | HOH2025 |
| Q | GLU84 |
| Q | HOH2027 |
| site_id | BC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD Q 2017 |
| Chain | Residue |
| Q | HIS39 |
| Q | HOH2018 |
| R | GLU84 |
| R | HOH4026 |
| site_id | BC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD R 2018 |
| Chain | Residue |
| R | HIS39 |
| R | HOH4013 |
| R | HOH4050 |
| S | GLU84 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD S 2019 |
| Chain | Residue |
| S | HIS39 |
| S | HOH3023 |
| S | HOH3034 |
| T | GLU84 |
| T | HOH184 |
| site_id | CC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD U 2020 |
| Chain | Residue |
| T | HIS39 |
| T | HOH142 |
| T | HOH153 |
| U | GLU84 |
| U | HOH2062 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CD O 2021 |
| Chain | Residue |
| O | GLU84 |
| U | HIS39 |
| U | HOH2027 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD V 2022 |
| Chain | Residue |
| V | HIS39 |
| V | HOH5028 |
| V | HOH5041 |
| V | HOH5113 |
| V | HOH5122 |
| site_id | CC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CD W 2023 |
| Chain | Residue |
| W | HIS39 |
| W | HOH5056 |
| W | HOH5057 |
| W | HOH5076 |
| W | HOH5081 |
| site_id | CC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD X 2024 |
| Chain | Residue |
| X | HOH5070 |
| X | HOH5095 |
| X | HIS39 |
| X | HOH5036 |
| site_id | CC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD Y 2025 |
| Chain | Residue |
| Y | HIS39 |
| Y | HOH5085 |
| Z | GLU15 |
| Z | HOH5060 |
| site_id | CC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD Z 2026 |
| Chain | Residue |
| Z | HIS39 |
| Z | HOH5031 |
| Z | HOH5042 |
| Z | HOH5057 |
| site_id | CC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CD 1 2027 |
| Chain | Residue |
| 1 | HIS39 |
| 2 | GLU15 |
| R | HOH4021 |
| site_id | DC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CD 2 2028 |
| Chain | Residue |
| 2 | HIS39 |
| 2 | HOH5049 |
| Q | HOH2034 |
| V | GLU15 |
| site_id | DC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE NA B 3001 |
| Chain | Residue |
| B | GLU58 |
| C | LYS55 |
| site_id | DC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE NA S 3002 |
| Chain | Residue |
| R | HOH4056 |
| site_id | DC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE NA V 3003 |
| Chain | Residue |
| V | HOH5062 |
| V | HOH5089 |
| site_id | DC5 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE NA R 3005 |
| Chain | Residue |
| Q | HOH2076 |
| site_id | DC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL G 4001 |
| Chain | Residue |
| G | ALA86 |
| G | GLU90 |
| G | VAL97 |
| G | HOH4011 |
| G | HOH4048 |
| H | GLY21 |
| H | HIS39 |
| H | ALA50 |
| site_id | DC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL H 4002 |
| Chain | Residue |
| G | GLU90 |
| H | HIS39 |
| H | ASN61 |
| H | ARG62 |
| H | CD2008 |
| H | HOH5023 |
| H | HOH5034 |
| I | ARG79 |
| site_id | DC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL M 4003 |
| Chain | Residue |
| M | GLU32 |
| M | GLU58 |
| M | PHE60 |
| M | HOH5053 |
| N | GLN25 |
| N | HOH5062 |
| site_id | DC9 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL X 4004 |
| Chain | Residue |
| O | GLU90 |
| O | HOH2049 |
| W | ALA50 |
| W | ASN61 |
| W | ARG62 |
| X | ARG79 |
| X | GLU116 |
| X | HOH5024 |
| X | HOH5045 |
| site_id | EC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL J 4005 |
| Chain | Residue |
| J | GLU58 |
| J | PHE60 |
| K | GLN25 |
| K | LYS55 |
| site_id | EC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL W 4006 |
| Chain | Residue |
| W | GLU32 |
| W | GLU58 |
| W | HOH5045 |
| W | HOH5074 |
| X | GLN25 |
| X | VAL33 |
| X | LYS55 |
| site_id | EC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL R 4007 |
| Chain | Residue |
| 1 | ASN61 |
| 1 | ARG62 |
| 2 | ARG79 |
| 2 | GLU116 |
| R | GLU90 |
| R | GLY95 |
| R | HOH4021 |
| R | HOH4022 |
| site_id | EC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL V 4008 |
| Chain | Residue |
| P | GLU90 |
| P | PRO94 |
| P | HOH2073 |
| V | HIS39 |
| V | ASN61 |
| V | ARG62 |
| V | HOH5104 |
| W | ARG79 |
| W | GLU116 |
| W | HOH5096 |
| site_id | EC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL 2 4009 |
| Chain | Residue |
| 2 | GLU32 |
| 2 | GLU58 |
| 2 | PHE60 |
| V | GLN25 |
| V | VAL33 |
| site_id | EC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL 1 4010 |
| Chain | Residue |
| 1 | GLU32 |
| 1 | TYR34 |
| 1 | GLU58 |
| 1 | PHE60 |
| 2 | GLN25 |
| 2 | LYS55 |
| 2 | HOH5070 |
| site_id | EC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL H 4011 |
| Chain | Residue |
| H | GLU32 |
| H | GLU58 |
| I | GLN25 |
| I | LYS55 |
| site_id | EC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 4012 |
| Chain | Residue |
| A | GLU32 |
| A | GLU58 |
| A | PHE60 |
| B | GLN25 |
| B | VAL33 |
| site_id | EC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACY W 5001 |
| Chain | Residue |
| P | PHE93 |
| P | ARG128 |
| W | THR103 |
| W | VAL105 |
| W | ARG113 |
| site_id | FC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACY X 5002 |
| Chain | Residue |
| O | PHE93 |
| O | ARG128 |
| X | THR103 |
| X | VAL105 |
| X | ARG113 |
| site_id | FC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACY M 5003 |
| Chain | Residue |
| C | PHE93 |
| C | ARG128 |
| M | THR103 |
| M | VAL105 |
| M | ARG113 |
| M | HOH5030 |
| site_id | FC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACY I 5004 |
| Chain | Residue |
| I | GLU23 |
| I | SER75 |
| I | THR76 |
| I | GLU77 |
| site_id | FC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ACY 2 5005 |
| Chain | Residue |
| 2 | ILE100 |
| 2 | THR103 |
| 2 | VAL105 |
| 2 | ARG113 |
| R | PHE93 |
| R | VAL125 |
| R | ARG128 |
| site_id | FC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACY Z 5006 |
| Chain | Residue |
| T | PHE93 |
| T | PRO124 |
| Z | THR103 |
| Z | VAL105 |
| Z | ARG113 |
| site_id | FC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACY V 5007 |
| Chain | Residue |
| Q | PHE93 |
| Q | VAL125 |
| V | THR103 |
| V | VAL105 |
| V | ARG113 |
| V | HOH5020 |
| site_id | FC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACY Y 5008 |
| Chain | Residue |
| U | PHE93 |
| U | VAL125 |
| U | ARG128 |
| Y | THR103 |
| Y | ARG113 |
| Y | HOH5025 |
| site_id | FC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ACY N 5009 |
| Chain | Residue |
| B | PHE93 |
| B | ARG128 |
| N | ILE100 |
| N | THR103 |
| N | VAL105 |
| N | ARG113 |
| N | HOH5070 |
| site_id | FC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE ACY I 5010 |
| Chain | Residue |
| G | PHE93 |
| G | VAL125 |
| G | ARG128 |
| I | ILE100 |
| I | THR103 |
| I | VAL105 |
| I | ARG113 |
| I | HOH5066 |
| site_id | GC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ACY W 5011 |
| Chain | Residue |
| W | LEU19 |
| W | GLU23 |
| W | SER75 |
| W | THR76 |
| W | GLU77 |
| W | HOH5031 |
| W | HOH5046 |
| site_id | GC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE ACY H 5012 |
| Chain | Residue |
| A | PHE93 |
| A | ARG128 |
| H | ILE100 |
| H | THR103 |
| H | VAL105 |
| H | ARG113 |
| H | HOH5070 |
| site_id | GC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE ACY K 5013 |
| Chain | Residue |
| E | PHE93 |
| E | VAL125 |
| E | ARG128 |
| K | ILE100 |
| K | THR103 |
| K | VAL105 |
| K | ARG113 |
| K | HOH5049 |
| site_id | GC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACY 1 5014 |
| Chain | Residue |
| 1 | ILE100 |
| 1 | THR103 |
| 1 | VAL105 |
| 1 | ARG113 |
| 1 | HOH5048 |
| S | PHE93 |
| site_id | GC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACY F 5015 |
| Chain | Residue |
| F | GLU32 |
| F | GLU58 |
| G | GLN25 |
