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1M4N

CRYSTAL STRUCTURE OF APPLE ACC SYNTHASE IN COMPLEX WITH [2-(AMINO-OXY)ETHYL](5'-DEOXYADENOSIN-5'-YL)(METHYL)SULFONIUM

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0009058biological_processbiosynthetic process
A0009693biological_processethylene biosynthetic process
A0009835biological_processfruit ripening
A0016491molecular_functionoxidoreductase activity
A0016829molecular_functionlyase activity
A0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
A0030170molecular_functionpyridoxal phosphate binding
A0042218biological_process1-aminocyclopropane-1-carboxylate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PLP A 501
ChainResidue
AGLY119
ASER270
ASER272
ALYS273
AARG281
AAAD502
AHOH768
AALA120
ATHR121
ATYR145
ATHR198
AASN202
AASP230
AILE232
ATYR233

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE AAD A 502
ChainResidue
AGLN83
AASP84
ATYR85
ATHR121
ATYR145
AGLY147
AARG150
AASP151
ALYS273
ASER301
APLP501
AMES601
AHOH619
AHOH624
AHOH685
AHOH717
AHOH776

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MES A 601
ChainResidue
AGLY44
ALEU45
AALA46
AGLU47
ATYR145
ALYS273
AARG407
AAAD502

Functional Information from PROSITE/UniProt
site_idPS00105
Number of Residues14
DetailsAA_TRANSFER_CLASS_1 Aminotransferases class-I pyridoxal-phosphate attachment site. SLSKdlGLpGFRVG
ChainResidueDetails
ASER270-GLY283

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000305|PubMed:12686108, ECO:0007744|PDB:1M4N
ChainResidueDetails
AASP84

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:12686108, ECO:0007744|PDB:1B8G, ECO:0007744|PDB:1M4N
ChainResidueDetails
ATYR145
AASP151

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:10610793, ECO:0000269|PubMed:9398277, ECO:0007744|PDB:1B8G, ECO:0007744|PDB:3PIU
ChainResidueDetails
ALYS273

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ay4
ChainResidueDetails
ATYR145
AASP230

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ay4
ChainResidueDetails
AALA90

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ay4
ChainResidueDetails
ALYS273
ATYR145
AASP230

site_idMCSA1
Number of Residues4
DetailsM-CSA 418
ChainResidueDetails
ATYR145activator, steric role
AASP230electrostatic stabiliser
AILE232steric role
ALYS273covalent catalysis, proton shuttle (general acid/base)

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PDB entries from 2024-07-24

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