1M3D
Structure of Type IV Collagen NC1 Domains
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005201 | molecular_function | extracellular matrix structural constituent |
A | 0005581 | cellular_component | collagen trimer |
B | 0005201 | molecular_function | extracellular matrix structural constituent |
B | 0005581 | cellular_component | collagen trimer |
C | 0005201 | molecular_function | extracellular matrix structural constituent |
C | 0005576 | cellular_component | extracellular region |
C | 0005581 | cellular_component | collagen trimer |
C | 0005604 | cellular_component | basement membrane |
D | 0005201 | molecular_function | extracellular matrix structural constituent |
D | 0005581 | cellular_component | collagen trimer |
E | 0005201 | molecular_function | extracellular matrix structural constituent |
E | 0005581 | cellular_component | collagen trimer |
F | 0005201 | molecular_function | extracellular matrix structural constituent |
F | 0005576 | cellular_component | extracellular region |
F | 0005581 | cellular_component | collagen trimer |
F | 0005604 | cellular_component | basement membrane |
G | 0005201 | molecular_function | extracellular matrix structural constituent |
G | 0005581 | cellular_component | collagen trimer |
H | 0005201 | molecular_function | extracellular matrix structural constituent |
H | 0005581 | cellular_component | collagen trimer |
I | 0005201 | molecular_function | extracellular matrix structural constituent |
I | 0005576 | cellular_component | extracellular region |
I | 0005581 | cellular_component | collagen trimer |
I | 0005604 | cellular_component | basement membrane |
J | 0005201 | molecular_function | extracellular matrix structural constituent |
J | 0005581 | cellular_component | collagen trimer |
K | 0005201 | molecular_function | extracellular matrix structural constituent |
K | 0005581 | cellular_component | collagen trimer |
L | 0005201 | molecular_function | extracellular matrix structural constituent |
L | 0005576 | cellular_component | extracellular region |
L | 0005581 | cellular_component | collagen trimer |
L | 0005604 | cellular_component | basement membrane |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE LU C 2001 |
Chain | Residue |
C | ASP148 |
C | GLU149 |
C | HOH3063 |
F | ASP148 |
F | HOH3127 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE LU F 2002 |
Chain | Residue |
F | HOH3067 |
B | HOH4078 |
C | ASP148 |
F | ASP148 |
F | GLU149 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE LU I 2003 |
Chain | Residue |
I | ASP148 |
I | GLU149 |
I | HOH3038 |
L | ASP148 |
L | HOH3116 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE LU L 2004 |
Chain | Residue |
I | HOH3110 |
L | ASP148 |
L | GLU149 |
L | HOH3046 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR A 3001 |
Chain | Residue |
A | ASN66 |
B | TYR189 |
D | ALA186 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR A 3002 |
Chain | Residue |
A | ALA186 |
D | ASN66 |
E | TYR189 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR E 3003 |
Chain | Residue |
E | ALA74 |
E | ARG76 |
E | ASP78 |
E | GLY178 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BR A 3004 |
Chain | Residue |
A | ARG179 |
D | ALA74 |
D | ARG76 |
D | ASP78 |
D | GLY178 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BR A 3005 |
Chain | Residue |
A | ALA74 |
A | ARG76 |
A | ASP78 |
A | GLY178 |
D | ARG179 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR H 3006 |
Chain | Residue |
H | ALA74 |
H | ARG76 |
H | ASP78 |
H | GLY178 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR C 3007 |
Chain | Residue |
C | ALA73 |
C | ARG75 |
C | ASP77 |
C | HOH3064 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BR J 3008 |
Chain | Residue |
G | ARG179 |
J | ALA74 |
J | ARG76 |
J | ASP78 |
J | GLY178 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR K 3009 |
Chain | Residue |
K | ALA74 |
K | ARG76 |
K | ASP78 |
K | GLY178 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR L 3010 |
Chain | Residue |
L | ALA73 |
L | ARG75 |
L | ASP77 |
L | HOH3066 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR H 3011 |
Chain | Residue |
G | ASN66 |
H | TYR189 |
J | ALA186 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR B 3012 |
Chain | Residue |
B | ALA74 |
B | ARG76 |
B | ASP78 |
B | GLY178 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BR F 3013 |
Chain | Residue |
B | HOH4010 |
F | ALA73 |
F | ARG75 |
F | ASP77 |
F | HOH3053 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR I 3014 |
Chain | Residue |
I | ALA73 |
I | ARG75 |
I | ASP77 |
I | HOH3052 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR G 3015 |
Chain | Residue |
G | ALA186 |
J | ASN66 |
K | TYR189 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR G 3016 |
Chain | Residue |
G | ALA74 |
G | ARG76 |
G | ASP78 |
J | ARG179 |
site_id | CC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR L 3017 |
Chain | Residue |
L | GLY211 |
L | ILE213 |
L | ARG214 |
site_id | CC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BR C 3018 |
Chain | Residue |
A | TYR189 |
C | TYR63 |
C | ASN65 |
C | TYR71 |
E | ALA186 |
site_id | CC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR C 3019 |
Chain | Residue |
C | ALA184 |
E | ASN66 |
F | TYR187 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR H 3020 |
Chain | Residue |
H | ASN66 |
I | TYR187 |
L | TYR183 |
L | ALA184 |
site_id | CC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR B 3021 |
Chain | Residue |
C | TYR187 |
F | ALA184 |
B | ASN66 |
site_id | CC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR F 3022 |
Chain | Residue |
B | ALA186 |
D | TYR189 |
F | TYR63 |
F | ASN65 |
site_id | CC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR I 3023 |
Chain | Residue |
G | TYR189 |
I | TYR63 |
I | ASN65 |
K | ALA186 |
site_id | DC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR I 3024 |
Chain | Residue |
I | ALA184 |
K | ASN66 |
L | TYR187 |
site_id | DC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR L 3025 |
Chain | Residue |
H | ALA186 |
J | TYR189 |
L | TYR63 |
L | ASN65 |
site_id | DC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE BR B 3026 |
Chain | Residue |
B | ARG55 |
site_id | DC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BR K 3027 |
Chain | Residue |
K | ARG55 |
L | HOH3098 |
site_id | DC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR B 3028 |
Chain | Residue |
B | PHE168 |
B | ARG216 |
B | HOH4074 |
site_id | DC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR C 3029 |
Chain | Residue |
C | GLY211 |
C | ILE213 |
C | ARG214 |
site_id | DC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR D 3030 |
Chain | Residue |
D | GLY213 |
D | LEU215 |
D | ARG216 |
site_id | DC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR G 3031 |
Chain | Residue |
G | GLY213 |
G | LEU215 |
G | ARG216 |
site_id | DC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR J 3032 |
Chain | Residue |
J | GLY213 |
J | LEU215 |
J | ARG216 |
site_id | EC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR K 3033 |
Chain | Residue |
K | GLY213 |
K | GLU214 |
K | LEU215 |
K | ARG216 |
site_id | EC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR B 3034 |
Chain | Residue |
B | GLY213 |
B | GLU214 |
B | LEU215 |
B | ARG216 |
site_id | EC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR H 3035 |
Chain | Residue |
H | GLY213 |
H | GLU214 |
H | LEU215 |
H | ARG216 |
site_id | EC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR E 3036 |
Chain | Residue |
E | GLY213 |
E | LEU215 |
E | ARG216 |
site_id | EC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 4001 |
Chain | Residue |
A | ALA194 |
A | THR195 |
A | SER208 |
A | HIS218 |
C | LEU62 |
C | TYR72 |
site_id | EC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 4002 |
Chain | Residue |
A | LEU63 |
A | PHE73 |
B | ALA194 |
B | THR195 |
B | HIS218 |
site_id | EC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL D 4003 |
Chain | Residue |
D | THR195 |
D | HIS218 |
F | LEU62 |
F | TYR72 |
site_id | EC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL E 4004 |
Chain | Residue |
D | LEU63 |
D | PHE73 |
E | ALA194 |
E | THR195 |
E | SER208 |
E | HIS218 |
site_id | EC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL G 4005 |
Chain | Residue |
G | ALA194 |
G | THR195 |
G | HIS218 |
I | LEU62 |
I | TYR72 |
site_id | FC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL H 4006 |
Chain | Residue |
G | LEU63 |
G | PHE73 |
H | ALA194 |
H | THR195 |
H | SER208 |
H | HIS218 |
site_id | FC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL J 4007 |
Chain | Residue |
J | ALA194 |
J | THR195 |
J | HIS218 |
J | HOH4099 |
L | LEU62 |
L | TYR72 |
site_id | FC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL K 4008 |
Chain | Residue |
J | LEU63 |
J | PHE73 |
K | ALA194 |
K | THR195 |
K | HIS218 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | MOD_RES: 3-hydroxyproline => ECO:0000269|PubMed:24368846 |
Chain | Residue | Details |
A | LYS204 | |
E | LYS204 | |
E | PRO207 | |
E | LEU210 | |
G | LYS204 | |
G | PRO207 | |
G | LEU210 | |
H | LYS204 | |
H | PRO207 | |
H | LEU210 | |
J | LYS204 | |
A | PRO207 | |
J | PRO207 | |
J | LEU210 | |
K | LYS204 | |
K | PRO207 | |
K | LEU210 | |
A | LEU210 | |
B | LYS204 | |
B | PRO207 | |
B | LEU210 | |
D | LYS204 | |
D | PRO207 | |
D | LEU210 |