Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1LOL

Crystal structure of orotidine monophosphate decarboxylase complex with XMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU2 A 5001
ChainResidue
AASP70
ALYS72
ALEU123
AVAL155
AXMP2001
AHOH3015

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU2 B 5002
ChainResidue
BILE1096
BVAL1155
BXMP2002
BLYS1042
BASP1070
BLYS1072

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XMP A 2001
ChainResidue
AALA18
AASP20
ALYS42
AASP70
AMET126
ASER127
ASER158
APRO180
AGLY202
AARG203
AHOH3009
AHOH3011
AHOH3012
AHOH3015
AHOH3085
ABU25001
BILE1076
BHOH3066

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE XMP B 2002
ChainResidue
AILE76
BALA1018
BASP1020
BLYS1042
BASP1070
BSER1127
BPRO1157
BSER1158
BPRO1180
BGLY1202
BARG1203
BHOH3059
BHOH3112
BHOH3155
BHOH3159
BBU25002

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS1072

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP1070
BSER1127
BPRO1180
BGLY1202
BARG1203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP1020
BLYS1042

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS72
AASP70

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP1070
BLYS1072

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS42
AASP75
ALYS72
AASP70

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP1070
BASP1075
BLYS1072
BLYS1042

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon