1LD4

Placement of the Structural Proteins in Sindbis Virus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004252	molecular_function	serine-type endopeptidase activity
A	0006508	biological_process	proteolysis
B	0004252	molecular_function	serine-type endopeptidase activity
B	0006508	biological_process	proteolysis
C	0004252	molecular_function	serine-type endopeptidase activity
C	0006508	biological_process	proteolysis
D	0004252	molecular_function	serine-type endopeptidase activity
D	0006508	biological_process	proteolysis
E	0003700	molecular_function	DNA-binding transcription factor activity
E	0006355	biological_process	regulation of DNA-templated transcription
F	0003700	molecular_function	DNA-binding transcription factor activity
F	0006355	biological_process	regulation of DNA-templated transcription
G	0003700	molecular_function	DNA-binding transcription factor activity
G	0006355	biological_process	regulation of DNA-templated transcription
H	0003700	molecular_function	DNA-binding transcription factor activity
H	0006355	biological_process	regulation of DNA-templated transcription
I	0003700	molecular_function	DNA-binding transcription factor activity
I	0006355	biological_process	regulation of DNA-templated transcription
J	0003700	molecular_function	DNA-binding transcription factor activity
J	0006355	biological_process	regulation of DNA-templated transcription
K	0003700	molecular_function	DNA-binding transcription factor activity
K	0006355	biological_process	regulation of DNA-templated transcription
L	0003700	molecular_function	DNA-binding transcription factor activity
L	0006355	biological_process	regulation of DNA-templated transcription
M	0004252	molecular_function	serine-type endopeptidase activity
M	0019028	cellular_component	viral capsid
M	0055036	cellular_component	virion membrane
N	0004252	molecular_function	serine-type endopeptidase activity
N	0019028	cellular_component	viral capsid
N	0055036	cellular_component	virion membrane
O	0004252	molecular_function	serine-type endopeptidase activity
O	0019028	cellular_component	viral capsid
O	0055036	cellular_component	virion membrane
P	0004252	molecular_function	serine-type endopeptidase activity
P	0019028	cellular_component	viral capsid
P	0055036	cellular_component	virion membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE LYS M1196

Chain	Residue
M	MET1195
M	PRO1197
M	GLY1198
M	ALA1199

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site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX N4440

Chain	Residue
N	ARG4324
N	GLU4325

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site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE LYS N4196

Chain	Residue
N	ALA4199
N	MET4195
N	PRO4197
N	GLY4198

---

site_id	AC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE UNX O5440

Chain	Residue
O	GLU5325

---

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE LYS O5196

Chain	Residue
O	MET5195
O	PRO5197
O	GLY5198
O	ALA5199

---

site_id	AC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE UNX P6440

Chain	Residue
P	GLU6325

---

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE LYS P6196

Chain	Residue
P	MET6195
P	PRO6197
P	GLY6198
P	ALA6199

---

Functional Information from PROSITE/UniProt

site_id	PS00036
Number of Residues	15
Details	BZIP_BASIC Basic-leucine zipper (bZIP) domain signature. Kra.RNTeAARRsRAR

Chain	Residue	Details
E	LYS1131-ARG1145

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	80
Details	TRANSMEM: Helical => ECO:0000255

Chain	Residue	Details
M	TRP1409-ALA1429
D	HIS6141
D	ASP6163
D	SER6215
N	TRP4409-ALA4429
O	TRP5409-ALA5429
P	TRP6409-ALA6429
B	ASP4163
B	SER4215
C	HIS5141
C	ASP5163
C	SER5215

---

site_id	SWS_FT_FI2
Number of Residues	8
Details	CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255

Chain	Residue	Details
M	ASN1139
M	ASN1245
N	ASN4139
N	ASN4245
O	ASN5139
O	ASN5245
P	ASN6139
P	ASN6245

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	SITE: Cleavage; by autolysis => ECO:0000250|UniProtKB:P03315

Chain	Residue	Details
A	TRP1264
B	TRP4264
C	TRP5264
D	TRP6264

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