Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1L9B

X-Ray Structure of the Cytochrome-c(2)-Photosynthetic Reaction Center Electron Transfer Complex from Rhodobacter sphaeroides in Type II Co-Crystals

Functional Information from GO Data

Chain	GOid	namespace	contents
C	0009055	molecular_function	electron transfer activity
C	0020037	molecular_function	heme binding
C	0042597	cellular_component	periplasmic space
H	0019684	biological_process	photosynthesis, light reaction
H	0030077	cellular_component	plasma membrane light-harvesting complex
H	0042717	cellular_component	plasma membrane-derived chromatophore membrane
L	0009772	biological_process	photosynthetic electron transport in photosystem II
L	0019684	biological_process	photosynthesis, light reaction
L	0030077	cellular_component	plasma membrane light-harvesting complex
L	0042717	cellular_component	plasma membrane-derived chromatophore membrane
M	0009772	biological_process	photosynthetic electron transport in photosystem II
M	0019684	biological_process	photosynthesis, light reaction
M	0030077	cellular_component	plasma membrane light-harvesting complex
M	0042717	cellular_component	plasma membrane-derived chromatophore membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE FE2 M 1007

Chain	Residue
L	HIS190
L	HIS230
M	HIS219
M	GLU234
M	HIS266

site_id	AC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL M 1010

Chain	Residue
M	HIS145

site_id	AC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE NA L 1011

Chain	Residue
L	TRP266
M	PHE90

site_id	AC4
Number of Residues	14
Details	BINDING SITE FOR RESIDUE BCL M 1001

Chain	Residue
L	MET174
L	ILE177
L	SER178
L	THR182
L	BPH1005
M	ILE179
M	HIS182
M	LEU183
M	THR186
M	BCL1003
M	LDA1015
M	HOH1082
M	HOH1084
L	HIS168

site_id	AC5
Number of Residues	19
Details	BINDING SITE FOR RESIDUE BCL L 1002

Chain	Residue
L	PHE97
L	ALA124
L	LEU131
L	VAL157
L	TYR162
L	ASN166
L	HIS168
L	HIS173
L	ALA176
L	ILE177
L	PHE180
L	SER244
L	ALA245
L	CYS247
L	MET248
L	BCL1004
L	HOH1109
M	BCL1003
M	BPH1006

site_id	AC6
Number of Residues	23
Details	BINDING SITE FOR RESIDUE BCL M 1003

Chain	Residue
L	TYR162
L	PHE181
L	BCL1002
L	BPH1005
M	ALA153
M	LEU156
M	TRP157
M	THR186
M	ASN187
M	PHE189
M	SER190
M	LEU196
M	PHE197
M	HIS202
M	SER205
M	ILE206
M	TYR210
M	VAL276
M	THR277
M	GLY280
M	GLY281
M	ILE284
M	BCL1001

site_id	AC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE BCL L 1004

Chain	Residue
L	ILE46
L	TYR128
L	LEU131
L	ILE150
L	HIS153
L	LEU154
L	BCL1002
M	PHE197
M	GLY203
M	ILE206
M	ALA207
M	TYR210
M	LEU214
M	BPH1006
M	LDA1013

site_id	AC8
Number of Residues	19
Details	BINDING SITE FOR RESIDUE BPH L 1005

Chain	Residue
L	PHE181
L	ALA184
L	LEU185
L	LEU189
L	LEU219
M	LEU60
M	GLY63
M	LEU64
M	ALA125
M	VAL126
M	TRP129
M	ALA149
M	PHE150
M	ALA273
M	VAL274
M	THR277
M	BCL1001
M	BCL1003
M	HOH1084

site_id	AC9
Number of Residues	16
Details	BINDING SITE FOR RESIDUE BPH M 1006

Chain	Residue
L	TRP100
L	GLU104
L	ILE117
L	PHE121
L	HIS153
L	SER237
L	LEU238
L	VAL241
L	BCL1002
L	BCL1004
M	TYR210
M	ALA213
M	LEU214
M	TRP252
M	MET256
L	PHE97

site_id	BC1
Number of Residues	10
Details	BINDING SITE FOR RESIDUE U10 M 1008

Chain	Residue
M	HIS219
M	THR222
M	TRP252
M	PHE258
M	ASN259
M	ALA260
M	THR261
M	MET262
M	ILE265
M	MET272

site_id	BC2
Number of Residues	21
Details	BINDING SITE FOR RESIDUE HEM C 1009

Chain	Residue
C	CYS15
C	CYS18
C	HIS19
C	THR36
C	PRO38
C	ARG46
C	ALA48
C	GLY49
C	PHE54
C	TYR57
C	GLY58
C	MET61
C	TRP71
C	PHE76
C	TYR79
C	LYS99
C	MET100
C	THR101
C	PHE102
C	HOH1041
C	HOH1057

site_id	BC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE LDA M 1012

Chain	Residue
H	TYR30
M	ARG267
M	TRP271
M	LEU278
M	HOH1072

site_id	BC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE LDA M 1013

Chain	Residue
H	ILE28
L	BCL1004
M	LEU204
M	HOH1050

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE LDA H 1014

Chain	Residue
H	MET175
H	ALA176
H	MET193
H	GLN194
L	HTO1021

site_id	BC6
Number of Residues	10
Details	BINDING SITE FOR RESIDUE LDA M 1015

Chain	Residue
M	PHE67
M	PHE74
M	MET122
M	TRP157
M	VAL175
M	PRO176
M	TYR177
M	HIS182
M	BCL1001
M	HOH1032

site_id	BC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE LDA L 1016

Chain	Residue
L	TRP59
L	ILE64

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE LDA L 1017

Chain	Residue
L	ILE49
L	PRO61

site_id	BC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE LDA L 1018

Chain	Residue
L	VAL98
L	PRO118

site_id	CC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE LDA H 1019

Chain	Residue
H	TRP21

site_id	CC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE LDA L 1020

Chain	Residue
L	TRP262
L	TRP265

site_id	CC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE HTO L 1021

Chain	Residue
H	LDA1014
L	HIS116
L	ARG231

site_id	CC4
Number of Residues	8
Details	BINDING SITE FOR RESIDUE HTO C 1022

Chain	Residue
C	GLN16
C	THR17
C	ARG32
C	ALA34
L	ASP155
L	ASN159
L	HOH1028
M	ASN195

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NfhynPaHmiAisffftnalalAlHGA

Chain	Residue	Details
L	ASN166-ALA192
M	ASN195-ALA221

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	58
Details	Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"1645718","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	278
Details	Transmembrane: {"description":"Helical"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	87
Details	Topological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"1645718","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	6
Details	Binding site: {"description":"axial binding residue"}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	7
Details	Binding site: {}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	2
Details	Binding site: {"description":"covalent"}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	1
Details	Modified residue: {"description":"Pyrrolidone carboxylic acid","evidences":[{"source":"PubMed","id":"8827449","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)