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1KB2

Crystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin (SPP) Response Element

Functional Information from GO Data
ChainGOidnamespacecontents
A0003700molecular_functionDNA-binding transcription factor activity
A0006355biological_processregulation of DNA-templated transcription
A0008270molecular_functionzinc ion binding
A0043565molecular_functionsequence-specific DNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0006355biological_processregulation of DNA-templated transcription
B0008270molecular_functionzinc ion binding
B0043565molecular_functionsequence-specific DNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 150
ChainResidue
ACYS24
ACYS27
ACYS41
ACYS44

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 151
ChainResidue
ACYS60
ACYS66
ACYS76
ACYS79

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 350
ChainResidue
BCYS227
BCYS241
BCYS244
BCYS224

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 351
ChainResidue
BCYS260
BCYS266
BCYS276
BCYS279

Functional Information from PROSITE/UniProt
site_idPS00031
Number of Residues27
DetailsNUCLEAR_REC_DBD_1 Nuclear hormones receptors DNA-binding region signature. CgvCg.Dratgf.HFnamtCegCkgFFrR
ChainResidueDetails
ACYS24-ARG50

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues150
DetailsDNA_BIND: Nuclear receptor => ECO:0000255|PROSITE-ProRule:PRU00407
ChainResidueDetails
APRO21-THR96
BPRO221-THR296

site_idSWS_FT_FI2
Number of Residues88
DetailsZN_FING: NR C4-type => ECO:0000255|PROSITE-ProRule:PRU00407
ChainResidueDetails
ACYS24-CYS44
ACYS60-CYS84
BCYS224-CYS244
BCYS260-CYS284

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:11980721, ECO:0000269|PubMed:15225774, ECO:0007744|PDB:1KB2, ECO:0007744|PDB:1KB4, ECO:0007744|PDB:1KB6, ECO:0007744|PDB:1YNW
ChainResidueDetails
ACYS24
BCYS227
BCYS241
BCYS244
BCYS260
BCYS266
BCYS276
BCYS279
ACYS27
ACYS41
ACYS44
ACYS60
ACYS66
ACYS76
ACYS79
BCYS224

221051

PDB entries from 2024-06-12

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