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1K8W

Crystal structure of the E. coli pseudouridine synthase TruB bound to a T stem-loop RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0001522biological_processpseudouridine synthesis
A0003723molecular_functionRNA binding
A0005829cellular_componentcytosol
A0006396biological_processRNA processing
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0009451biological_processRNA modification
A0009982molecular_functionpseudouridine synthase activity
A0016853molecular_functionisomerase activity
A0031119biological_processtRNA pseudouridine synthesis
A0061818biological_processtRNA folding
A0106029molecular_functiontRNA pseudouridine synthase activity
A0140098molecular_functioncatalytic activity, acting on RNA
A0160148molecular_functiontRNA pseudouridine(55) synthase activity
A1990481biological_processmRNA pseudouridine synthesis
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 901
ChainResidue
ALYS31
AARG34
AARG220
AHOH562
ASO4902

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 902
ChainResidue
ALYS31
AARG220
ASO4901

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 903
ChainResidue
ATHR272
ASER273
APRO257

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 904
ChainResidue
AARG81
AHOH652
AHOH679

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 905
ChainResidue
AARG271
AARG302
AHOH680

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 906
ChainResidue
ATHR102
AGLN132
AGLY192
BC406

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 907
ChainResidue
APRO49
AASP113
BG412

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 908
ChainResidue
AARG77
ATYR199
ALEU203
AGLN225
AGLN228
AGLN229

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 909
ChainResidue
AARG85
AGLU97
ALYS134
AGLU138
AGLN142
AHOH742

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 910
ChainResidue
ALEU258
ASER261
AVAL262
ALYS265
AGLU285

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000255|HAMAP-Rule:MF_01080, ECO:0000305|PubMed:11779468
ChainResidueDetails
AASP48

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01080, ECO:0000305|PubMed:11779468
ChainResidueDetails
AHIS43
ATYR76
ATYR179
AARG202

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ze1
ChainResidueDetails
AASP48
ATYR76

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PDB entries from 2024-10-16

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