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1JXI

4-Amino-5-hydroxymethyl-2-methylpyrimidine Phosphate Kinase from Salmonella typhimurium complexed with 4-Amino-5-hydroxymethyl-2-methylpyrimidine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0008902molecular_functionhydroxymethylpyrimidine kinase activity
A0008972molecular_functionphosphomethylpyrimidine kinase activity
A0009228biological_processthiamine biosynthetic process
A0009229biological_processthiamine diphosphate biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
B0000166molecular_functionnucleotide binding
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0008902molecular_functionhydroxymethylpyrimidine kinase activity
B0008972molecular_functionphosphomethylpyrimidine kinase activity
B0009228biological_processthiamine biosynthetic process
B0009229biological_processthiamine diphosphate biosynthetic process
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0016740molecular_functiontransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 2003
ChainResidue
AASP105
ATHR106
AGLU142
ALYS176
AGLY212
ASO42005

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 2004
ChainResidue
BLYS176
BGLY212
BSO42006
BASP105
BTHR106
BGLU142

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 2005
ChainResidue
ATHR208
AHIS209
AGLY210
AHMH2001
ASO42003

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 2006
ChainResidue
BTHR208
BGLY210
BTHR211
BGLY212
BHMH2002
BSO42004

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HMH A 2001
ChainResidue
AGLY11
ATHR12
AGLU44
ALYS111
ACYS213
ASO42005
AHOH2023

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HMH B 2002
ChainResidue
BGLY11
BTHR12
BGLU44
BMET80
BCYS213
BSO42006
BHOH2014

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11839308
ChainResidueDetails
AGLU44
BGLU44

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 670
ChainResidueDetails
ALYS176electrostatic stabiliser
ATHR208metal ligand
AGLY210electrostatic stabiliser
ATHR211electrostatic stabiliser
AGLY212electrostatic stabiliser
ACYS213electrostatic stabiliser

site_idMCSA2
Number of Residues6
DetailsM-CSA 670
ChainResidueDetails
BLYS176electrostatic stabiliser
BTHR208metal ligand
BGLY210electrostatic stabiliser
BTHR211electrostatic stabiliser
BGLY212electrostatic stabiliser
BCYS213electrostatic stabiliser

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PDB entries from 2024-04-24

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