1JV7
BACTERIORHODOPSIN O-LIKE INTERMEDIATE STATE OF THE D85S MUTANT AT 2.25 ANGSTROM RESOLUTION
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005216 | molecular_function | monoatomic ion channel activity |
A | 0005886 | cellular_component | plasma membrane |
A | 0006811 | biological_process | monoatomic ion transport |
A | 0007602 | biological_process | phototransduction |
A | 0009881 | molecular_function | photoreceptor activity |
A | 0015454 | molecular_function | light-driven active monoatomic ion transmembrane transporter activity |
A | 0016020 | cellular_component | membrane |
A | 1902600 | biological_process | proton transmembrane transport |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE RET A 301 |
Chain | Residue |
A | TYR83 |
A | TRP189 |
A | ASP212 |
A | ALA215 |
A | LYS216 |
A | TRP86 |
A | THR89 |
A | THR90 |
A | MET118 |
A | SER141 |
A | TRP182 |
A | TYR185 |
A | PRO186 |
site_id | AC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE LI1 A 701 |
Chain | Residue |
A | GLN105 |
A | ILE108 |
A | VAL112 |
A | ILE191 |
A | ILE198 |
A | VAL199 |
A | ILE203 |
A | LEU207 |
site_id | AC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE LI1 A 702 |
Chain | Residue |
A | LEU22 |
A | ILE117 |
site_id | AC4 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE LI1 A 704 |
Chain | Residue |
A | MET56 |
A | LEU58 |
A | SER59 |
A | TRP80 |
A | ALA81 |
A | ALA84 |
A | PHE88 |
A | LEU146 |
A | TYR150 |
A | PHE153 |
A | VAL179 |
A | VAL180 |
A | SER183 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE LI1 A 705 |
Chain | Residue |
A | VAL173 |
A | ASN176 |
A | VAL177 |
A | LEU181 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE LI1 A 706 |
Chain | Residue |
A | TYR83 |
A | LEU87 |
A | ILE119 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE LI1 A 707 |
Chain | Residue |
A | TYR131 |
A | PHE135 |
A | TRP138 |
A | THR142 |
A | GLY195 |
A | ALA196 |
A | LI1709 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE LI1 A 708 |
Chain | Residue |
A | MET32 |
A | MET32 |
A | TYR131 |
A | SER132 |
A | PHE135 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE LI1 A 709 |
Chain | Residue |
A | ALA44 |
A | TYR131 |
A | LI1707 |
Functional Information from PROSITE/UniProt
site_id | PS00327 |
Number of Residues | 12 |
Details | BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. FMVLDVsAKvGF |
Chain | Residue | Details |
A | PHE208-PHE219 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 19 |
Details | Transmembrane: {"description":"Helical; Name=Helix A","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 40 |
Details | Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 18 |
Details | Transmembrane: {"description":"Helical; Name=Helix B","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 16 |
Details | Transmembrane: {"description":"Helical; Name=Helix C","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 19 |
Details | Transmembrane: {"description":"Helical; Name=Helix D","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 17 |
Details | Topological domain: {"description":"Extracellular","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 19 |
Details | Transmembrane: {"description":"Helical; Name=Helix E","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 18 |
Details | Transmembrane: {"description":"Helical; Name=Helix F","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 19 |
Details | Transmembrane: {"description":"Helical; Name=Helix G","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 1 |
Details | Site: {"description":"Primary proton acceptor","evidences":[{"source":"PubMed","id":"10903866","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"10949309","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI11 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-(retinylidene)lysine","evidences":[{"source":"PubMed","id":"10452895","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10467143","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10548112","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10903866","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10949307","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10949309","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11829498","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28008064","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"6794028","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9287223","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9632391","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9751724","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1C3W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1F50","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IW9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1KG8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1KG9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1M0L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1M0M","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1O0A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1P8H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1P8U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1Q5J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1QHJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1QKP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1QM8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1R2N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1R84","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1S8J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TN0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1TN5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1X0I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1X0K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1X0S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XJI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2AT9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BRD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2I1X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2I20","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2I21","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2NTU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2NTW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2WJK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2WJL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ZFE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ZZL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3COD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3HAN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3HAO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3HAP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3HAQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3HAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3HAS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3NS0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3NSB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3T45","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3UTV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3UTW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3UTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VHZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3VI0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4FPD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HWL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4MD1","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4MD2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4X31","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4X32","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5A44","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5A45","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5B34","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5B6V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5B6W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5B6X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5B6Y","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5B6Z","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5BR2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5BR5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2M","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5H2P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5J7A","evidenceCode":"ECO:0007744"}]} 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Chain | Residue | Details |