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1JTS

DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006879biological_processintracellular iron ion homeostasis
A0006950biological_processresponse to stress
A0008199molecular_functionferric iron binding
A0009295cellular_componentnucleoid
A0016020cellular_componentmembrane
A0016491molecular_functionoxidoreductase activity
A0016722molecular_functionoxidoreductase activity, acting on metal ions
A0030261biological_processchromosome condensation
A0032297biological_processnegative regulation of DNA-templated DNA replication initiation
A0042594biological_processresponse to starvation
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A1990084cellular_componentDnaA-Dps complex
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006879biological_processintracellular iron ion homeostasis
B0006950biological_processresponse to stress
B0008199molecular_functionferric iron binding
B0009295cellular_componentnucleoid
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0016722molecular_functionoxidoreductase activity, acting on metal ions
B0030261biological_processchromosome condensation
B0032297biological_processnegative regulation of DNA-templated DNA replication initiation
B0042594biological_processresponse to starvation
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B1990084cellular_componentDnaA-Dps complex
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0006879biological_processintracellular iron ion homeostasis
C0006950biological_processresponse to stress
C0008199molecular_functionferric iron binding
C0009295cellular_componentnucleoid
C0016020cellular_componentmembrane
C0016491molecular_functionoxidoreductase activity
C0016722molecular_functionoxidoreductase activity, acting on metal ions
C0030261biological_processchromosome condensation
C0032297biological_processnegative regulation of DNA-templated DNA replication initiation
C0042594biological_processresponse to starvation
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
C1990084cellular_componentDnaA-Dps complex
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0006879biological_processintracellular iron ion homeostasis
D0006950biological_processresponse to stress
D0008199molecular_functionferric iron binding
D0009295cellular_componentnucleoid
D0016020cellular_componentmembrane
D0016491molecular_functionoxidoreductase activity
D0016722molecular_functionoxidoreductase activity, acting on metal ions
D0030261biological_processchromosome condensation
D0032297biological_processnegative regulation of DNA-templated DNA replication initiation
D0042594biological_processresponse to starvation
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
D1990084cellular_componentDnaA-Dps complex
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0006879biological_processintracellular iron ion homeostasis
E0006950biological_processresponse to stress
E0008199molecular_functionferric iron binding
E0009295cellular_componentnucleoid
E0016020cellular_componentmembrane
E0016491molecular_functionoxidoreductase activity
E0016722molecular_functionoxidoreductase activity, acting on metal ions
E0030261biological_processchromosome condensation
E0032297biological_processnegative regulation of DNA-templated DNA replication initiation
E0042594biological_processresponse to starvation
E0042802molecular_functionidentical protein binding
E0046872molecular_functionmetal ion binding
E1990084cellular_componentDnaA-Dps complex
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005737cellular_componentcytoplasm
F0006879biological_processintracellular iron ion homeostasis
F0006950biological_processresponse to stress
F0008199molecular_functionferric iron binding
F0009295cellular_componentnucleoid
F0016020cellular_componentmembrane
F0016491molecular_functionoxidoreductase activity
F0016722molecular_functionoxidoreductase activity, acting on metal ions
F0030261biological_processchromosome condensation
F0032297biological_processnegative regulation of DNA-templated DNA replication initiation
F0042594biological_processresponse to starvation
F0042802molecular_functionidentical protein binding
F0046872molecular_functionmetal ion binding
F1990084cellular_componentDnaA-Dps complex
G0003677molecular_functionDNA binding
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0006879biological_processintracellular iron ion homeostasis
G0006950biological_processresponse to stress
G0008199molecular_functionferric iron binding
G0009295cellular_componentnucleoid
G0016020cellular_componentmembrane
G0016491molecular_functionoxidoreductase activity
G0016722molecular_functionoxidoreductase activity, acting on metal ions
G0030261biological_processchromosome condensation
G0032297biological_processnegative regulation of DNA-templated DNA replication initiation
G0042594biological_processresponse to starvation
G0042802molecular_functionidentical protein binding
G0046872molecular_functionmetal ion binding
G1990084cellular_componentDnaA-Dps complex
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0006879biological_processintracellular iron ion homeostasis
H0006950biological_processresponse to stress
H0008199molecular_functionferric iron binding
H0009295cellular_componentnucleoid
H0016020cellular_componentmembrane
H0016491molecular_functionoxidoreductase activity
H0016722molecular_functionoxidoreductase activity, acting on metal ions
H0030261biological_processchromosome condensation
H0032297biological_processnegative regulation of DNA-templated DNA replication initiation
H0042594biological_processresponse to starvation
H0042802molecular_functionidentical protein binding
H0046872molecular_functionmetal ion binding
H1990084cellular_componentDnaA-Dps complex
I0003677molecular_functionDNA binding
I0005515molecular_functionprotein binding
I0005737cellular_componentcytoplasm
I0006879biological_processintracellular iron ion homeostasis
I0006950biological_processresponse to stress
I0008199molecular_functionferric iron binding
I0009295cellular_componentnucleoid
I0016020cellular_componentmembrane
I0016491molecular_functionoxidoreductase activity
I0016722molecular_functionoxidoreductase activity, acting on metal ions
I0030261biological_processchromosome condensation
I0032297biological_processnegative regulation of DNA-templated DNA replication initiation
I0042594biological_processresponse to starvation
I0042802molecular_functionidentical protein binding
I0046872molecular_functionmetal ion binding
I1990084cellular_componentDnaA-Dps complex
J0003677molecular_functionDNA binding
J0005515molecular_functionprotein binding
J0005737cellular_componentcytoplasm
J0006879biological_processintracellular iron ion homeostasis
J0006950biological_processresponse to stress
J0008199molecular_functionferric iron binding
J0009295cellular_componentnucleoid
J0016020cellular_componentmembrane
J0016491molecular_functionoxidoreductase activity
J0016722molecular_functionoxidoreductase activity, acting on metal ions
J0030261biological_processchromosome condensation
J0032297biological_processnegative regulation of DNA-templated DNA replication initiation
J0042594biological_processresponse to starvation
J0042802molecular_functionidentical protein binding
J0046872molecular_functionmetal ion binding
J1990084cellular_componentDnaA-Dps complex
K0003677molecular_functionDNA binding
K0005515molecular_functionprotein binding
K0005737cellular_componentcytoplasm
K0006879biological_processintracellular iron ion homeostasis
K0006950biological_processresponse to stress
K0008199molecular_functionferric iron binding
K0009295cellular_componentnucleoid
K0016020cellular_componentmembrane
K0016491molecular_functionoxidoreductase activity
K0016722molecular_functionoxidoreductase activity, acting on metal ions
K0030261biological_processchromosome condensation
K0032297biological_processnegative regulation of DNA-templated DNA replication initiation
K0042594biological_processresponse to starvation
K0042802molecular_functionidentical protein binding
K0046872molecular_functionmetal ion binding
K1990084cellular_componentDnaA-Dps complex
L0003677molecular_functionDNA binding
L0005515molecular_functionprotein binding
L0005737cellular_componentcytoplasm
L0006879biological_processintracellular iron ion homeostasis
L0006950biological_processresponse to stress
L0008199molecular_functionferric iron binding
L0009295cellular_componentnucleoid
L0016020cellular_componentmembrane
L0016491molecular_functionoxidoreductase activity
L0016722molecular_functionoxidoreductase activity, acting on metal ions
L0030261biological_processchromosome condensation
L0032297biological_processnegative regulation of DNA-templated DNA replication initiation
L0042594biological_processresponse to starvation
L0042802molecular_functionidentical protein binding
L0046872molecular_functionmetal ion binding
L1990084cellular_componentDnaA-Dps complex
M0003677molecular_functionDNA binding
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0006879biological_processintracellular iron ion homeostasis
M0006950biological_processresponse to stress
M0008199molecular_functionferric iron binding
M0009295cellular_componentnucleoid
M0016020cellular_componentmembrane
M0016491molecular_functionoxidoreductase activity
M0016722molecular_functionoxidoreductase activity, acting on metal ions
M0030261biological_processchromosome condensation
M0032297biological_processnegative regulation of DNA-templated DNA replication initiation
M0042594biological_processresponse to starvation
M0042802molecular_functionidentical protein binding
M0046872molecular_functionmetal ion binding
M1990084cellular_componentDnaA-Dps complex
N0003677molecular_functionDNA binding
N0005515molecular_functionprotein binding
N0005737cellular_componentcytoplasm
N0006879biological_processintracellular iron ion homeostasis
N0006950biological_processresponse to stress
N0008199molecular_functionferric iron binding
N0009295cellular_componentnucleoid
N0016020cellular_componentmembrane
N0016491molecular_functionoxidoreductase activity
N0016722molecular_functionoxidoreductase activity, acting on metal ions
N0030261biological_processchromosome condensation
N0032297biological_processnegative regulation of DNA-templated DNA replication initiation
N0042594biological_processresponse to starvation
N0042802molecular_functionidentical protein binding
N0046872molecular_functionmetal ion binding
N1990084cellular_componentDnaA-Dps complex
O0003677molecular_functionDNA binding
O0005515molecular_functionprotein binding
O0005737cellular_componentcytoplasm
O0006879biological_processintracellular iron ion homeostasis
O0006950biological_processresponse to stress
O0008199molecular_functionferric iron binding
O0009295cellular_componentnucleoid
O0016020cellular_componentmembrane
O0016491molecular_functionoxidoreductase activity
O0016722molecular_functionoxidoreductase activity, acting on metal ions
O0030261biological_processchromosome condensation
O0032297biological_processnegative regulation of DNA-templated DNA replication initiation
O0042594biological_processresponse to starvation
O0042802molecular_functionidentical protein binding
O0046872molecular_functionmetal ion binding
O1990084cellular_componentDnaA-Dps complex
P0003677molecular_functionDNA binding
P0005515molecular_functionprotein binding
P0005737cellular_componentcytoplasm
P0006879biological_processintracellular iron ion homeostasis
P0006950biological_processresponse to stress
P0008199molecular_functionferric iron binding
P0009295cellular_componentnucleoid
P0016020cellular_componentmembrane
P0016491molecular_functionoxidoreductase activity
P0016722molecular_functionoxidoreductase activity, acting on metal ions
P0030261biological_processchromosome condensation
P0032297biological_processnegative regulation of DNA-templated DNA replication initiation
P0042594biological_processresponse to starvation
P0042802molecular_functionidentical protein binding
P0046872molecular_functionmetal ion binding
P1990084cellular_componentDnaA-Dps complex
Q0003677molecular_functionDNA binding
Q0005515molecular_functionprotein binding
Q0005737cellular_componentcytoplasm
Q0006879biological_processintracellular iron ion homeostasis
Q0006950biological_processresponse to stress
Q0008199molecular_functionferric iron binding
Q0009295cellular_componentnucleoid
Q0016020cellular_componentmembrane
Q0016491molecular_functionoxidoreductase activity
Q0016722molecular_functionoxidoreductase activity, acting on metal ions
Q0030261biological_processchromosome condensation
Q0032297biological_processnegative regulation of DNA-templated DNA replication initiation
Q0042594biological_processresponse to starvation
Q0042802molecular_functionidentical protein binding
Q0046872molecular_functionmetal ion binding
Q1990084cellular_componentDnaA-Dps complex
R0003677molecular_functionDNA binding
R0005515molecular_functionprotein binding
R0005737cellular_componentcytoplasm
R0006879biological_processintracellular iron ion homeostasis
R0006950biological_processresponse to stress
R0008199molecular_functionferric iron binding
R0009295cellular_componentnucleoid
R0016020cellular_componentmembrane
R0016491molecular_functionoxidoreductase activity
R0016722molecular_functionoxidoreductase activity, acting on metal ions
R0030261biological_processchromosome condensation
R0032297biological_processnegative regulation of DNA-templated DNA replication initiation
R0042594biological_processresponse to starvation
R0042802molecular_functionidentical protein binding
R0046872molecular_functionmetal ion binding
R1990084cellular_componentDnaA-Dps complex
S0003677molecular_functionDNA binding
S0005515molecular_functionprotein binding
S0005737cellular_componentcytoplasm
S0006879biological_processintracellular iron ion homeostasis
S0006950biological_processresponse to stress
S0008199molecular_functionferric iron binding
S0009295cellular_componentnucleoid
S0016020cellular_componentmembrane
S0016491molecular_functionoxidoreductase activity
S0016722molecular_functionoxidoreductase activity, acting on metal ions
S0030261biological_processchromosome condensation
S0032297biological_processnegative regulation of DNA-templated DNA replication initiation
S0042594biological_processresponse to starvation
S0042802molecular_functionidentical protein binding
S0046872molecular_functionmetal ion binding
S1990084cellular_componentDnaA-Dps complex
T0003677molecular_functionDNA binding
T0005515molecular_functionprotein binding
T0005737cellular_componentcytoplasm
T0006879biological_processintracellular iron ion homeostasis
T0006950biological_processresponse to stress
T0008199molecular_functionferric iron binding
T0009295cellular_componentnucleoid
T0016020cellular_componentmembrane
T0016491molecular_functionoxidoreductase activity
T0016722molecular_functionoxidoreductase activity, acting on metal ions
T0030261biological_processchromosome condensation
T0032297biological_processnegative regulation of DNA-templated DNA replication initiation
T0042594biological_processresponse to starvation
T0042802molecular_functionidentical protein binding
T0046872molecular_functionmetal ion binding
T1990084cellular_componentDnaA-Dps complex
U0003677molecular_functionDNA binding
U0005515molecular_functionprotein binding
U0005737cellular_componentcytoplasm
U0006879biological_processintracellular iron ion homeostasis
U0006950biological_processresponse to stress
U0008199molecular_functionferric iron binding
U0009295cellular_componentnucleoid
U0016020cellular_componentmembrane
U0016491molecular_functionoxidoreductase activity
U0016722molecular_functionoxidoreductase activity, acting on metal ions
U0030261biological_processchromosome condensation
U0032297biological_processnegative regulation of DNA-templated DNA replication initiation
U0042594biological_processresponse to starvation
U0042802molecular_functionidentical protein binding
U0046872molecular_functionmetal ion binding
U1990084cellular_componentDnaA-Dps complex
V0003677molecular_functionDNA binding
V0005515molecular_functionprotein binding
V0005737cellular_componentcytoplasm
V0006879biological_processintracellular iron ion homeostasis
V0006950biological_processresponse to stress
V0008199molecular_functionferric iron binding
V0009295cellular_componentnucleoid
V0016020cellular_componentmembrane
V0016491molecular_functionoxidoreductase activity
V0016722molecular_functionoxidoreductase activity, acting on metal ions
V0030261biological_processchromosome condensation
V0032297biological_processnegative regulation of DNA-templated DNA replication initiation
V0042594biological_processresponse to starvation
V0042802molecular_functionidentical protein binding
V0046872molecular_functionmetal ion binding
V1990084cellular_componentDnaA-Dps complex
W0003677molecular_functionDNA binding
W0005515molecular_functionprotein binding
W0005737cellular_componentcytoplasm
W0006879biological_processintracellular iron ion homeostasis
W0006950biological_processresponse to stress
W0008199molecular_functionferric iron binding
W0009295cellular_componentnucleoid
W0016020cellular_componentmembrane
W0016491molecular_functionoxidoreductase activity
W0016722molecular_functionoxidoreductase activity, acting on metal ions
W0030261biological_processchromosome condensation
W0032297biological_processnegative regulation of DNA-templated DNA replication initiation
W0042594biological_processresponse to starvation
W0042802molecular_functionidentical protein binding
W0046872molecular_functionmetal ion binding
W1990084cellular_componentDnaA-Dps complex
X0003677molecular_functionDNA binding
X0005515molecular_functionprotein binding
X0005737cellular_componentcytoplasm
X0006879biological_processintracellular iron ion homeostasis
X0006950biological_processresponse to stress
X0008199molecular_functionferric iron binding
X0009295cellular_componentnucleoid
X0016020cellular_componentmembrane
X0016491molecular_functionoxidoreductase activity
X0016722molecular_functionoxidoreductase activity, acting on metal ions
X0030261biological_processchromosome condensation
X0032297biological_processnegative regulation of DNA-templated DNA replication initiation
X0042594biological_processresponse to starvation
X0042802molecular_functionidentical protein binding
X0046872molecular_functionmetal ion binding
X1990084cellular_componentDnaA-Dps complex
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS A 301
ChainResidue
AASP146
EASP146
IASP146

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE TRS G 302
ChainResidue
GGLU64
KGLU64

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS G 303
ChainResidue
CGLU167
GGLU167
KGLU167

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS H 304
ChainResidue
HASP146
KASP146
BASP146

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS D 305
ChainResidue
DGLU64
DHOH718
IGLU64

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS D 306
ChainResidue
DGLU167
FGLU167
IGLU167

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS C 307
ChainResidue
CASP146
FASP146
LASP146

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS H 308
ChainResidue
AGLU64
HGLU64
HHOH561

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS A 309
ChainResidue
AGLU167
HGLU167
JGLU167

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS D 310
ChainResidue
DASP146
GASP146
JASP146

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE TRS L 311
ChainResidue
EGLU64
LGLU64

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS E 312
ChainResidue
BGLU167
EGLU167
LGLU167

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS M 313
ChainResidue
MASP146
QASP146
UASP146

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE TRS W 314
ChainResidue
SGLU64
WGLU64

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS W 315
ChainResidue
OGLU167
SGLU167
WGLU167

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS T 316
ChainResidue
NASP146
TASP146
WASP146

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE TRS P 317
ChainResidue
PGLU64
UGLU64

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS P 318
ChainResidue
PGLU167
RGLU167
UGLU167

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS R 319
ChainResidue
OASP146
RASP146
XASP146

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS T 320
ChainResidue
MGLU64
TGLU64
THOH715

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS M 321
ChainResidue
MGLU167
TGLU167
VGLU167

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS P 322
ChainResidue
PASP146
SASP146
VASP146

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS X 323
ChainResidue
NHOH559
QGLU64
XGLU64

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE TRS Q 324
ChainResidue
NGLU167
QGLU167
XGLU167

Functional Information from PROSITE/UniProt
site_idPS00818
Number of Residues17
DetailsDPS_1 Dps protein family signature 1. HWnMrGanfiaVHemlD
ChainResidueDetails
AHIS51-ASP67

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING:
ChainResidueDetails
ATRP52
JTRP52
KTRP52
LTRP52
MTRP52
NTRP52
OTRP52
PTRP52
QTRP52
RTRP52
STRP52
BTRP52
TTRP52
UTRP52
VTRP52
WTRP52
XTRP52
CTRP52
DTRP52
ETRP52
FTRP52
GTRP52
HTRP52
ITRP52

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: in other chain
ChainResidueDetails
ATHR79
JTHR79
KTHR79
LTHR79
MTHR79
NTHR79
OTHR79
PTHR79
QTHR79
RTHR79
STHR79
BTHR79
TTHR79
UTHR79
VTHR79
WTHR79
XTHR79
CTHR79
DTHR79
ETHR79
FTHR79
GTHR79
HTHR79
ITHR79

site_idSWS_FT_FI3
Number of Residues24
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
AARG83
JARG83
KARG83
LARG83
MARG83
NARG83
OARG83
PARG83
QARG83
RARG83
SARG83
BARG83
TARG83
UARG83
VARG83
WARG83
XARG83
CARG83
DARG83
EARG83
FARG83
GARG83
HARG83
IARG83

227344

PDB entries from 2024-11-13

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