Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1JQK

Crystal structure of carbon monoxide dehydrogenase from Rhodospirillum rubrum

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003824	molecular_function	catalytic activity
A	0004601	molecular_function	peroxidase activity
A	0005737	cellular_component	cytoplasm
A	0005886	cellular_component	plasma membrane
A	0006091	biological_process	generation of precursor metabolites and energy
A	0008198	molecular_function	ferrous iron binding
A	0016151	molecular_function	nickel cation binding
A	0016491	molecular_function	oxidoreductase activity
A	0018492	molecular_function	carbon-monoxide dehydrogenase (acceptor) activity
A	0032991	cellular_component	protein-containing complex
A	0042542	biological_process	response to hydrogen peroxide
A	0042803	molecular_function	protein homodimerization activity
A	0043885	molecular_function	carbon-monoxide dehydrogenase (ferredoxin) activity
A	0046872	molecular_function	metal ion binding
A	0050418	molecular_function	hydroxylamine reductase activity
A	0051538	molecular_function	3 iron, 4 sulfur cluster binding
A	0051539	molecular_function	4 iron, 4 sulfur cluster binding
A	0098869	biological_process	cellular oxidant detoxification
B	0003824	molecular_function	catalytic activity
B	0004601	molecular_function	peroxidase activity
B	0005737	cellular_component	cytoplasm
B	0005886	cellular_component	plasma membrane
B	0006091	biological_process	generation of precursor metabolites and energy
B	0008198	molecular_function	ferrous iron binding
B	0016151	molecular_function	nickel cation binding
B	0016491	molecular_function	oxidoreductase activity
B	0018492	molecular_function	carbon-monoxide dehydrogenase (acceptor) activity
B	0032991	cellular_component	protein-containing complex
B	0042542	biological_process	response to hydrogen peroxide
B	0042803	molecular_function	protein homodimerization activity
B	0043885	molecular_function	carbon-monoxide dehydrogenase (ferredoxin) activity
B	0046872	molecular_function	metal ion binding
B	0050418	molecular_function	hydroxylamine reductase activity
B	0051538	molecular_function	3 iron, 4 sulfur cluster binding
B	0051539	molecular_function	4 iron, 4 sulfur cluster binding
B	0098869	biological_process	cellular oxidant detoxification
C	0003824	molecular_function	catalytic activity
C	0004601	molecular_function	peroxidase activity
C	0005737	cellular_component	cytoplasm
C	0005886	cellular_component	plasma membrane
C	0006091	biological_process	generation of precursor metabolites and energy
C	0008198	molecular_function	ferrous iron binding
C	0016151	molecular_function	nickel cation binding
C	0016491	molecular_function	oxidoreductase activity
C	0018492	molecular_function	carbon-monoxide dehydrogenase (acceptor) activity
C	0032991	cellular_component	protein-containing complex
C	0042542	biological_process	response to hydrogen peroxide
C	0042803	molecular_function	protein homodimerization activity
C	0043885	molecular_function	carbon-monoxide dehydrogenase (ferredoxin) activity
C	0046872	molecular_function	metal ion binding
C	0050418	molecular_function	hydroxylamine reductase activity
C	0051538	molecular_function	3 iron, 4 sulfur cluster binding
C	0051539	molecular_function	4 iron, 4 sulfur cluster binding
C	0098869	biological_process	cellular oxidant detoxification
D	0003824	molecular_function	catalytic activity
D	0004601	molecular_function	peroxidase activity
D	0005737	cellular_component	cytoplasm
D	0005886	cellular_component	plasma membrane
D	0006091	biological_process	generation of precursor metabolites and energy
D	0008198	molecular_function	ferrous iron binding
D	0016151	molecular_function	nickel cation binding
D	0016491	molecular_function	oxidoreductase activity
D	0018492	molecular_function	carbon-monoxide dehydrogenase (acceptor) activity
D	0032991	cellular_component	protein-containing complex
D	0042542	biological_process	response to hydrogen peroxide
D	0042803	molecular_function	protein homodimerization activity
D	0043885	molecular_function	carbon-monoxide dehydrogenase (ferredoxin) activity
D	0046872	molecular_function	metal ion binding
D	0050418	molecular_function	hydroxylamine reductase activity
D	0051538	molecular_function	3 iron, 4 sulfur cluster binding
D	0051539	molecular_function	4 iron, 4 sulfur cluster binding
D	0098869	biological_process	cellular oxidant detoxification
E	0003824	molecular_function	catalytic activity
E	0004601	molecular_function	peroxidase activity
E	0005737	cellular_component	cytoplasm
E	0005886	cellular_component	plasma membrane
E	0006091	biological_process	generation of precursor metabolites and energy
E	0008198	molecular_function	ferrous iron binding
E	0016151	molecular_function	nickel cation binding
E	0016491	molecular_function	oxidoreductase activity
E	0018492	molecular_function	carbon-monoxide dehydrogenase (acceptor) activity
E	0032991	cellular_component	protein-containing complex
E	0042542	biological_process	response to hydrogen peroxide
E	0042803	molecular_function	protein homodimerization activity
E	0043885	molecular_function	carbon-monoxide dehydrogenase (ferredoxin) activity
E	0046872	molecular_function	metal ion binding
E	0050418	molecular_function	hydroxylamine reductase activity
E	0051538	molecular_function	3 iron, 4 sulfur cluster binding
E	0051539	molecular_function	4 iron, 4 sulfur cluster binding
E	0098869	biological_process	cellular oxidant detoxification
F	0003824	molecular_function	catalytic activity
F	0004601	molecular_function	peroxidase activity
F	0005737	cellular_component	cytoplasm
F	0005886	cellular_component	plasma membrane
F	0006091	biological_process	generation of precursor metabolites and energy
F	0008198	molecular_function	ferrous iron binding
F	0016151	molecular_function	nickel cation binding
F	0016491	molecular_function	oxidoreductase activity
F	0018492	molecular_function	carbon-monoxide dehydrogenase (acceptor) activity
F	0032991	cellular_component	protein-containing complex
F	0042542	biological_process	response to hydrogen peroxide
F	0042803	molecular_function	protein homodimerization activity
F	0043885	molecular_function	carbon-monoxide dehydrogenase (ferredoxin) activity
F	0046872	molecular_function	metal ion binding
F	0050418	molecular_function	hydroxylamine reductase activity
F	0051538	molecular_function	3 iron, 4 sulfur cluster binding
F	0051539	molecular_function	4 iron, 4 sulfur cluster binding
F	0098869	biological_process	cellular oxidant detoxification

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE FE2 A 801

Chain	Residue
A	HIS265
A	CYS300
A	CYS531
A	WCC800

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE FE2 B 801

Chain	Residue
B	HIS265
B	CYS300
B	CYS531
B	WCC800

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE FE2 C 801

Chain	Residue
C	CYS300
C	CYS531
C	WCC800
C	HIS265

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE FE2 D 801

Chain	Residue
D	HIS265
D	CYS300
D	CYS531
D	WCC800

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE FE2 E 801

Chain	Residue
E	HIS265
E	CYS300
E	CYS531
E	WCC800

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE FE2 F 801

Chain	Residue
F	HIS265
F	CYS300
F	CYS531
F	WCC800

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SF4 A 700

Chain	Residue
A	CYS41
A	GLY44
A	CYS49
B	CYS41
B	GLY44
B	CYS49
B	ARG51

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SF4 A 750

Chain	Residue
A	CYS50
A	CYS53
A	CYS58
A	CYS72

site_id	AC9
Number of Residues	11
Details	BINDING SITE FOR RESIDUE WCC A 800

Chain	Residue
A	HIS265
A	CYS300
A	CYS338
A	GLY450
A	CYS451
A	CYS481
A	CYS531
A	SER566
A	LYS568
A	FE2801
A	UNX802

site_id	BC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX A 802

Chain	Residue
A	CYS531
A	WCC800

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SF4 B 750

Chain	Residue
B	CYS50
B	CYS53
B	CYS58
B	CYS72

site_id	BC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE WCC B 800

Chain	Residue
B	HIS265
B	CYS300
B	CYS338
B	GLY450
B	CYS451
B	CYS481
B	CYS531
B	SER566
B	LYS568
B	FE2801
B	UNX802

site_id	BC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX B 802

Chain	Residue
B	CYS531
B	WCC800

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SF4 C 701

Chain	Residue
C	CYS41
C	GLY44
C	CYS49
C	ARG51
D	CYS41
D	CYS49

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SF4 C 750

Chain	Residue
C	CYS50
C	CYS53
C	CYS58
C	VAL71
C	CYS72

site_id	BC7
Number of Residues	11
Details	BINDING SITE FOR RESIDUE WCC C 800

Chain	Residue
C	HIS265
C	CYS300
C	CYS338
C	GLY450
C	CYS451
C	CYS481
C	CYS531
C	SER566
C	LYS568
C	FE2801
C	UNX802

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX C 802

Chain	Residue
C	CYS531
C	WCC800

site_id	BC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SF4 D 750

Chain	Residue
D	CYS50
D	CYS53
D	GLY56
D	CYS58
D	CYS72

site_id	CC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE WCC D 800

Chain	Residue
D	CYS481
D	CYS531
D	SER566
D	LYS568
D	FE2801
D	UNX802
D	HIS265
D	CYS300
D	CYS338
D	GLY450
D	CYS451

site_id	CC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX D 802

Chain	Residue
D	CYS531
D	WCC800

site_id	CC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SF4 E 702

Chain	Residue
E	CYS41
E	CYS49
F	CYS41
F	GLY44
F	CYS49

site_id	CC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SF4 E 750

Chain	Residue
E	CYS50
E	CYS53
E	GLY56
E	CYS58
E	CYS72

site_id	CC5
Number of Residues	11
Details	BINDING SITE FOR RESIDUE WCC E 800

Chain	Residue
E	HIS265
E	CYS300
E	CYS338
E	GLY450
E	CYS451
E	CYS481
E	CYS531
E	SER566
E	LYS568
E	FE2801
E	UNX802

site_id	CC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX E 802

Chain	Residue
E	CYS531
E	WCC800

site_id	CC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SF4 F 750

Chain	Residue
F	CYS50
F	CYS53
F	CYS58
F	CYS72

site_id	CC8
Number of Residues	11
Details	BINDING SITE FOR RESIDUE WCC F 800

Chain	Residue
F	HIS265
F	CYS300
F	CYS338
F	GLY450
F	CYS451
F	CYS481
F	CYS531
F	SER566
F	LYS568
F	FE2801
F	UNX802

site_id	CC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE UNX F 802

Chain	Residue
F	CYS531
F	WCC800

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	72
Details	BINDING: BINDING => ECO:0000269\|PubMed:11593006

Chain	Residue	Details
A	CYS41
A	CYS451
A	CYS481
A	CYS531
B	CYS41
B	CYS49
B	CYS50
B	CYS53
B	CYS58
B	CYS72
B	HIS265
A	CYS49
B	CYS300
B	CYS338
B	CYS451
B	CYS481
B	CYS531
C	CYS41
C	CYS49
C	CYS50
C	CYS53
C	CYS58
A	CYS50
C	CYS72
C	HIS265
C	CYS300
C	CYS338
C	CYS451
C	CYS481
C	CYS531
D	CYS41
D	CYS49
D	CYS50
A	CYS53
D	CYS53
D	CYS58
D	CYS72
D	HIS265
D	CYS300
D	CYS338
D	CYS451
D	CYS481
D	CYS531
E	CYS41
A	CYS58
E	CYS49
E	CYS50
E	CYS53
E	CYS58
E	CYS72
E	HIS265
E	CYS300
E	CYS338
E	CYS451
E	CYS481
A	CYS72
E	CYS531
F	CYS41
F	CYS49
F	CYS50
F	CYS53
F	CYS58
F	CYS72
F	HIS265
F	CYS300
F	CYS338
A	HIS265
F	CYS451
F	CYS481
F	CYS531
A	CYS300
A	CYS338

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)