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1JN0

Crystal structure of the non-regulatory A4 isoform of spinach chloroplast glyceraldehyde-3-phosphate dehydrogenase complexed with NADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0006006biological_processglucose metabolic process
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0050661molecular_functionNADP binding
A0051287molecular_functionNAD binding
B0006006biological_processglucose metabolic process
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0050661molecular_functionNADP binding
B0051287molecular_functionNAD binding
O0006006biological_processglucose metabolic process
O0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
O0050661molecular_functionNADP binding
O0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 O 6336
ChainResidue
OTHR179
OASP181
OARG231
ONDP6335
OHOH6349

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 O 6337
ChainResidue
OALA210
OSER148
OTHR150
OTHR208
OGLY209

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1336
ChainResidue
ATHR179
AASP181
AARG231
ANDP1335
AHOH1343

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1337
ChainResidue
ASER148
ATHR150
ASER207
ATHR208
AGLY209
AALA210
AHOH1344
AHOH1392

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 2336
ChainResidue
BTHR179
BASP181
BARG195
BARG231
BNDP2335
BHOH2343
BHOH2376

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 2337
ChainResidue
BSER148
BTHR150
BTHR208
BGLY209
BALA210
BHOH2355
BHOH2356

site_idAC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NDP O 6335
ChainResidue
OGLY9
OARG10
OILE11
OASN31
OTHR33
OASP76
OARG77
OGLY95
OTHR96
OGLY97
OPHE99
OTHR119
OALA120
OSER188
OASN313
OTYR317
OSO46336
OHOH6341
OHOH6345
OHOH6367

site_idAC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE NDP A 1335
ChainResidue
AGLY9
AARG10
AILE11
AASN31
ATHR33
AARG77
AGLY95
ATHR96
AGLY97
ATHR119
AALA120
AASN313
ATYR317
ASO41336
AHOH1358
BSER188

site_idAC9
Number of Residues17
DetailsBINDING SITE FOR RESIDUE NDP B 2335
ChainResidue
ASER188
BARG10
BILE11
BASN31
BTHR33
BASP76
BARG77
BGLY95
BTHR96
BGLY97
BPHE99
BTHR119
BALA120
BASN313
BTYR317
BSO42336
BHOH2374

Functional Information from PROSITE/UniProt
site_idPS00071
Number of Residues8
DetailsGAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL
ChainResidueDetails
OALA147-LEU154

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Nucleophile
ChainResidueDetails
OVAL217
AVAL217
BVAL217

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:11846565, ECO:0000269|PubMed:12705826, ECO:0000269|PubMed:15236965, ECO:0000269|PubMed:17573533
ChainResidueDetails
OSER75
BPHE99
BILE143
BTRP315
OPHE99
OILE143
OTRP315
ASER75
APHE99
AILE143
ATRP315
BSER75

site_idSWS_FT_FI3
Number of Residues15
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
OLEU216
AMET298
BLEU216
BSER247
BSER262
BASP275
BMET298
OSER247
OSER262
OASP275
OMET298
ALEU216
ASER247
ASER262
AASP275

site_idSWS_FT_FI4
Number of Residues3
DetailsSITE: Activates thiol group during catalysis => ECO:0000250
ChainResidueDetails
OVAL244
AVAL244
BVAL244

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1szj
ChainResidueDetails
OCYS149
OHIS176

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1szj
ChainResidueDetails
ACYS149
AHIS176

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1szj
ChainResidueDetails
BCYS149
BHIS176

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PDB entries from 2024-07-24

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