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1JJK

Selenomethionine Substitution of Orotidine-5'-monophosphate Decarboxylase from E. coli Causes a Change in Crystal Contacts and Space Group

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0015949biological_processnucleobase-containing small molecule interconversion
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0015949biological_processnucleobase-containing small molecule interconversion
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
C0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
C0006221biological_processpyrimidine nucleotide biosynthetic process
C0015949biological_processnucleobase-containing small molecule interconversion
C0016831molecular_functioncarboxy-lyase activity
C0044205biological_process'de novo' UMP biosynthetic process
D0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
D0006221biological_processpyrimidine nucleotide biosynthetic process
D0015949biological_processnucleobase-containing small molecule interconversion
D0016831molecular_functioncarboxy-lyase activity
D0044205biological_process'de novo' UMP biosynthetic process
E0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
E0006221biological_processpyrimidine nucleotide biosynthetic process
E0015949biological_processnucleobase-containing small molecule interconversion
E0016831molecular_functioncarboxy-lyase activity
E0044205biological_process'de novo' UMP biosynthetic process
F0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
F0005515molecular_functionprotein binding
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
F0006221biological_processpyrimidine nucleotide biosynthetic process
F0015949biological_processnucleobase-containing small molecule interconversion
F0016831molecular_functioncarboxy-lyase activity
F0044205biological_process'de novo' UMP biosynthetic process
G0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
G0006221biological_processpyrimidine nucleotide biosynthetic process
G0015949biological_processnucleobase-containing small molecule interconversion
G0016831molecular_functioncarboxy-lyase activity
G0044205biological_process'de novo' UMP biosynthetic process
H0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
H0006221biological_processpyrimidine nucleotide biosynthetic process
H0015949biological_processnucleobase-containing small molecule interconversion
H0016831molecular_functioncarboxy-lyase activity
H0044205biological_process'de novo' UMP biosynthetic process
I0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
I0005515molecular_functionprotein binding
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
I0006221biological_processpyrimidine nucleotide biosynthetic process
I0015949biological_processnucleobase-containing small molecule interconversion
I0016831molecular_functioncarboxy-lyase activity
I0044205biological_process'de novo' UMP biosynthetic process
J0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
J0005515molecular_functionprotein binding
J0005737cellular_componentcytoplasm
J0005829cellular_componentcytosol
J0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
J0006221biological_processpyrimidine nucleotide biosynthetic process
J0015949biological_processnucleobase-containing small molecule interconversion
J0016831molecular_functioncarboxy-lyase activity
J0044205biological_process'de novo' UMP biosynthetic process
K0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
K0005515molecular_functionprotein binding
K0005737cellular_componentcytoplasm
K0005829cellular_componentcytosol
K0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
K0006221biological_processpyrimidine nucleotide biosynthetic process
K0015949biological_processnucleobase-containing small molecule interconversion
K0016831molecular_functioncarboxy-lyase activity
K0044205biological_process'de novo' UMP biosynthetic process
L0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
L0005515molecular_functionprotein binding
L0005737cellular_componentcytoplasm
L0005829cellular_componentcytosol
L0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
L0006221biological_processpyrimidine nucleotide biosynthetic process
L0015949biological_processnucleobase-containing small molecule interconversion
L0016831molecular_functioncarboxy-lyase activity
L0044205biological_process'de novo' UMP biosynthetic process
M0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
M0006221biological_processpyrimidine nucleotide biosynthetic process
M0015949biological_processnucleobase-containing small molecule interconversion
M0016831molecular_functioncarboxy-lyase activity
M0044205biological_process'de novo' UMP biosynthetic process
N0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
N0005515molecular_functionprotein binding
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
N0006221biological_processpyrimidine nucleotide biosynthetic process
N0015949biological_processnucleobase-containing small molecule interconversion
N0016831molecular_functioncarboxy-lyase activity
N0044205biological_process'de novo' UMP biosynthetic process
O0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
O0005515molecular_functionprotein binding
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
O0006221biological_processpyrimidine nucleotide biosynthetic process
O0015949biological_processnucleobase-containing small molecule interconversion
O0016831molecular_functioncarboxy-lyase activity
O0044205biological_process'de novo' UMP biosynthetic process
P0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
P0005515molecular_functionprotein binding
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
P0006221biological_processpyrimidine nucleotide biosynthetic process
P0015949biological_processnucleobase-containing small molecule interconversion
P0016831molecular_functioncarboxy-lyase activity
P0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP A 301
ChainResidue
AALA20
AGLN201
AGLY221
AARG222
BASP76
BILE77
BTHR80
AASP22
ALYS44
AASP71
ALYS73
ALEU130
ATHR131
APRO189
AARG192

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP B 302
ChainResidue
AASP76
AILE77
ATHR80
BALA20
BASP22
BLYS44
BASP71
BLYS73
BLEU130
BTHR131
BPRO189
BARG192
BGLN201
BGLY221
BARG222

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP C 303
ChainResidue
CALA20
CASP22
CLYS44
CASP71
CLYS73
CLEU130
CTHR131
CPRO189
CARG192
CGLN201
CGLY221
CARG222
DASP76
DILE77
DTHR80

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP D 304
ChainResidue
CASP76
CILE77
CTHR80
DALA20
DASP22
DLYS44
DASP71
DLYS73
DLEU130
DTHR131
DPRO189
DARG192
DGLN201
DGLY221
DARG222

site_idAC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP E 305
ChainResidue
EALA20
EASP22
ELYS44
EASP71
ELYS73
ELEU130
ETHR131
EPRO189
EARG192
EGLN201
EGLY221
EARG222
FASP76
FILE77
FTHR80

site_idAC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP F 306
ChainResidue
EASP76
EILE77
ETHR80
FALA20
FASP22
FLYS44
FASP71
FLYS73
FLEU130
FTHR131
FPRO189
FARG192
FGLN201
FGLY221
FARG222

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP G 307
ChainResidue
GGLN201
GGLY221
GARG222
HASP76
HILE77
HTHR80
GALA20
GASP22
GLYS44
GASP71
GLYS73
GLEU130
GTHR131
GPRO189
GARG192

site_idAC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP H 308
ChainResidue
GASP76
GILE77
GTHR80
HALA20
HASP22
HLYS44
HASP71
HLYS73
HLEU130
HTHR131
HPRO189
HARG192
HGLN201
HGLY221
HARG222

site_idAC9
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP I 309
ChainResidue
IALA20
IASP22
ILYS44
IASP71
ILYS73
ILEU130
ITHR131
IPRO189
IARG192
IGLN201
IGLY221
IARG222
JASP76
JILE77
JTHR80

site_idBC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP J 310
ChainResidue
IASP76
IILE77
ITHR80
JALA20
JASP22
JLYS44
JASP71
JLYS73
JLEU130
JTHR131
JPRO189
JARG192
JGLN201
JGLY221
JARG222

site_idBC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP K 311
ChainResidue
KALA20
KASP22
KLYS44
KASP71
KLYS73
KLEU130
KTHR131
KPRO189
KARG192
KGLN201
KGLY221
KARG222
LASP76
LILE77
LTHR80

site_idBC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP L 312
ChainResidue
KASP76
KILE77
KTHR80
LALA20
LASP22
LLYS44
LASP71
LLYS73
LLEU130
LTHR131
LPRO189
LARG192
LGLN201
LGLY221
LARG222

site_idBC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP M 313
ChainResidue
MALA20
MASP22
MLYS44
MASP71
MLYS73
MLEU130
MTHR131
MPRO189
MARG192
MGLN201
MGLY221
MARG222
NASP76
NILE77
NTHR80

site_idBC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP N 314
ChainResidue
MASP76
MILE77
MTHR80
NALA20
NASP22
NLYS44
NASP71
NLYS73
NLEU130
NTHR131
NPRO189
NARG192
NGLN201
NGLY221
NARG222

site_idBC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP O 315
ChainResidue
OALA20
OASP22
OLYS44
OASP71
OLYS73
OLEU130
OTHR131
OPRO189
OARG192
OGLN201
OGLY221
OARG222
PASP76
PILE77
PTHR80

site_idBC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BMP P 316
ChainResidue
OASP76
OILE77
OTHR80
PALA20
PASP22
PLYS44
PASP71
PLYS73
PLEU130
PTHR131
PPRO189
PARG192
PGLN201
PGLY221
PARG222

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IFlDlKfhDIPnTA
ChainResidueDetails
AILE68-ALA81

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS73
JLYS73
KLYS73
LLYS73
MLYS73
NLYS73
OLYS73
PLYS73
BLYS73
CLYS73
DLYS73
ELYS73
FLYS73
GLYS73
HLYS73
ILYS73

site_idSWS_FT_FI2
Number of Residues128
DetailsBINDING:
ChainResidueDetails
AASP22
BLYS44
MTHR131
MARG192
MGLN201
MGLY221
MARG222
NASP22
NLYS44
NASP71
NTHR131
NARG192
BASP71
NGLN201
NGLY221
NARG222
OASP22
OLYS44
OASP71
OTHR131
OARG192
OGLN201
OGLY221
BTHR131
OARG222
PASP22
PLYS44
PASP71
PTHR131
PARG192
PGLN201
PGLY221
PARG222
BARG192
BGLN201
BGLY221
BARG222
CASP22
CLYS44
CASP71
ALYS44
CTHR131
CARG192
CGLN201
CGLY221
CARG222
DASP22
DLYS44
DASP71
DTHR131
DARG192
AASP71
DGLN201
DGLY221
DARG222
EASP22
ELYS44
EASP71
ETHR131
EARG192
EGLN201
EGLY221
ATHR131
EARG222
FASP22
FLYS44
FASP71
FTHR131
FARG192
FGLN201
FGLY221
FARG222
GASP22
AARG192
GLYS44
GASP71
GTHR131
GARG192
GGLN201
GGLY221
GARG222
HASP22
HLYS44
HASP71
AGLN201
HTHR131
HARG192
HGLN201
HGLY221
HARG222
IASP22
ILYS44
IASP71
ITHR131
IARG192
AGLY221
IGLN201
IGLY221
IARG222
JASP22
JLYS44
JASP71
JTHR131
JARG192
JGLN201
JGLY221
AARG222
JARG222
KASP22
KLYS44
KASP71
KTHR131
KARG192
KGLN201
KGLY221
KARG222
LASP22
BASP22
LLYS44
LASP71
LTHR131
LARG192
LGLN201
LGLY221
LARG222
MASP22
MLYS44
MASP71

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
AASP71
ALYS73

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
JASP71
JLYS73

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
KASP71
KLYS73

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
LASP71
LLYS73

site_idCSA13
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
MASP71
MLYS73

site_idCSA14
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
NASP71
NLYS73

site_idCSA15
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
OASP71
OLYS73

site_idCSA16
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
PASP71
PLYS73

site_idCSA17
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ALYS44
AASP76
AASP71
ALYS73

site_idCSA18
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BLYS44
BASP76
BASP71
BLYS73

site_idCSA19
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
CLYS44
CASP76
CASP71
CLYS73

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP71
BLYS73

site_idCSA20
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
DLYS44
DASP76
DASP71
DLYS73

site_idCSA21
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ELYS44
EASP76
EASP71
ELYS73

site_idCSA22
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
FLYS44
FASP76
FASP71
FLYS73

site_idCSA23
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
GLYS44
GASP76
GASP71
GLYS73

site_idCSA24
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
HLYS44
HASP76
HASP71
HLYS73

site_idCSA25
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
ILYS44
IASP76
IASP71
ILYS73

site_idCSA26
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
JLYS44
JASP76
JASP71
JLYS73

site_idCSA27
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
KLYS44
KASP76
KASP71
KLYS73

site_idCSA28
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
LLYS44
LASP76
LASP71
LLYS73

site_idCSA29
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
MLYS44
MASP76
MASP71
MLYS73

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
CASP71
CLYS73

site_idCSA30
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
NLYS44
NASP76
NASP71
NLYS73

site_idCSA31
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
OLYS44
OASP76
OASP71
OLYS73

site_idCSA32
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
PLYS44
PASP76
PASP71
PLYS73

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
DASP71
DLYS73

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
EASP71
ELYS73

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
FASP71
FLYS73

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
GASP71
GLYS73

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
HASP71
HLYS73

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
IASP71
ILYS73

226707

PDB entries from 2024-10-30

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