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1J49

INSIGHTS INTO DOMAIN CLOSURE, SUBSTRATE SPECIFICITY AND CATALYSIS OF D-LACTATE DEHYDROGENASE FROM LACTOBACILLUS BULGARICUS

Functional Information from GO Data
ChainGOidnamespacecontents
A0008720molecular_functionD-lactate dehydrogenase activity
A0016491molecular_functionoxidoreductase activity
A0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0051287molecular_functionNAD binding
B0008720molecular_functionD-lactate dehydrogenase activity
B0016491molecular_functionoxidoreductase activity
B0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 341
ChainResidue
BASN78
BVAL79
BGLY80
BTYR102
BARG236
BHIS297
BNAD360
BHOH422

site_idAC2
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAD A 350
ChainResidue
AILE107
AGLY153
AGLY155
AHIS156
AILE157
ATYR175
AASP176
AILE177
AHIS206
AVAL207
APRO208
AASN213
AVAL234
ASER235
AARG236
AASP260
AHIS297
AALA299
APHE300
AHOH390
AHOH428
AHOH463
AHOH470
AHOH485
AHOH487
ATYR102

site_idAC3
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAD B 360
ChainResidue
BTYR102
BILE107
BGLY155
BHIS156
BILE157
BTYR175
BASP176
BILE177
BHIS206
BVAL207
BPRO208
BASN213
BVAL234
BSER235
BARG236
BASP260
BHIS297
BALA299
BPHE300
BSO4341
BHOH376
BHOH379
BHOH382
BHOH386
BHOH395
BHOH453

Functional Information from PROSITE/UniProt
site_idPS00065
Number of Residues28
DetailsD_2_HYDROXYACID_DH_1 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. VGVVGtGHIGqvfmqimegfgak.VItYD
ChainResidueDetails
AVAL149-ASP176

site_idPS00670
Number of Residues23
DetailsD_2_HYDROXYACID_DH_2 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. LYkqADVIsLHvPdvpaNvhMiN
ChainResidueDetails
ALEU196-ASN218

site_idPS00671
Number of Residues17
DetailsD_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. MKqDvVIVNvSRGpLVD
ChainResidueDetails
AMET225-ASP241

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000305|PubMed:9063466
ChainResidueDetails
AARG236
AGLU265
BARG236
BGLU265

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000305|PubMed:9063466
ChainResidueDetails
AHIS297
BHIS297

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:12054772, ECO:0007744|PDB:1J49
ChainResidueDetails
AHIS156
AASP176
AASN213
AASP260
BHIS156
BASP176
BASN213
BASP260

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:12054772
ChainResidueDetails
AVAL207
BVAL207

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:12054772
ChainResidueDetails
AVAL234
BVAL234

Catalytic Information from CSA
site_idCSA1
Number of Residues3
Detailsa catalytic site defined by CSA, PubMed 12054772, 10712593
ChainResidueDetails
AHIS297
AARG236
AASP260

site_idMCSA1
Number of Residues4
DetailsM-CSA 576
ChainResidueDetails
AARG236electrostatic stabiliser
AASP260steric role
AGLU265electrostatic stabiliser
AHIS297proton acceptor, proton donor

site_idMCSA2
Number of Residues4
DetailsM-CSA 576
ChainResidueDetails
BARG236electrostatic stabiliser
BASP260steric role
BGLU265electrostatic stabiliser
BHIS297proton acceptor, proton donor

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PDB entries from 2024-07-17

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