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1J1U

Crystal structure of archaeal tyrosyl-tRNA synthetase complexed with tRNA(Tyr) and L-tyrosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004831molecular_functiontyrosine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006437biological_processtyrosyl-tRNA aminoacylation
A0016874molecular_functionligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1501
ChainResidue
BHOH60
BHOH350
BA509
BG510
BU548

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1502
ChainResidue
BHOH291
BHOH292
BHOH61
BHOH288
BHOH289
BHOH290

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 503
ChainResidue
AHIS160
AHOH722
AHOH723

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1503
ChainResidue
BHOH18
BHOH77
BHOH278
BHOH359
BHOH360
BHOH361

site_idAC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TYR A 401
ChainResidue
ATYR32
AGLY34
AGLU36
ALEU65
AALA67
AHIS70
ATYR151
AGLN155
AASP158
AGLN173
AHOH599
AHOH705

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues10
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..SGkIHLGHY
ChainResidueDetails
APRO37-TYR46

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsRegion: {"description":"Tyrosine"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsRegion: {"description":"Interaction with t-RNA"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsMotif: {"description":"'HIGH' region"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"12754495","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsSite: {"description":"Interaction with t-RNA"}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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