1IXP
Enzyme-phosphate Complex of Pyridoxine 5'-Phosphate synthase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0008615 | biological_process | pyridoxine biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
A | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
A | 0042802 | molecular_function | identical protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0008615 | biological_process | pyridoxine biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
B | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
B | 0042802 | molecular_function | identical protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0008615 | biological_process | pyridoxine biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
C | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
C | 0042802 | molecular_function | identical protein binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0008615 | biological_process | pyridoxine biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0016769 | molecular_function | transferase activity, transferring nitrogenous groups |
D | 0033856 | molecular_function | pyridoxine 5'-phosphate synthase activity |
D | 0042802 | molecular_function | identical protein binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 A 1001 |
Chain | Residue |
A | ASP11 |
A | HIS12 |
A | ARG20 |
A | HIS52 |
A | HOH1087 |
A | HOH1089 |
site_id | AC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 A 1002 |
Chain | Residue |
A | GLY194 |
A | ILE214 |
A | GLY215 |
A | HIS216 |
A | HOH1034 |
A | HOH1087 |
A | ARG20 |
A | GLY192 |
A | HIS193 |
site_id | AC3 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PO4 C 1003 |
Chain | Residue |
B | ARG20 |
C | GLY192 |
C | HIS193 |
C | GLY194 |
C | ASN213 |
C | ILE214 |
C | GLY215 |
C | HIS216 |
C | ALA217 |
C | HOH1100 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 C 1004 |
Chain | Residue |
B | ARG20 |
C | ASP11 |
C | HIS12 |
C | HIS45 |
C | HIS52 |
C | HOH1100 |
site_id | AC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PO4 B 1005 |
Chain | Residue |
B | GLY192 |
B | HIS193 |
B | GLY194 |
B | ILE214 |
B | GLY215 |
B | HIS216 |
B | HOH1091 |
C | ARG20 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 B 1006 |
Chain | Residue |
B | ASP11 |
B | HIS12 |
B | HIS45 |
B | HIS52 |
C | ARG20 |
C | HOH1065 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 D 1007 |
Chain | Residue |
D | ASP11 |
D | HIS12 |
D | ARG20 |
D | HIS45 |
D | HIS52 |
D | HOH1012 |
D | HOH1123 |
site_id | AC8 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PO4 D 1008 |
Chain | Residue |
D | ARG20 |
D | GLY192 |
D | HIS193 |
D | GLY194 |
D | ASN213 |
D | ILE214 |
D | GLY215 |
D | HIS216 |
D | ALA217 |
D | HOH1012 |
D | HOH1114 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | Active site: {"description":"Proton acceptor"} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | Active site: {"description":"Proton donor"} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 32 |
Details | Binding site: {} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | Site: {"description":"Transition state stabilizer"} |
Chain | Residue | Details |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
A | ASN9 | electrostatic stabiliser, hydrogen bond donor |
A | HIS12 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | HIS45 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | ARG47 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
A | ARG51 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
A | GLU72 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
A | THR103 | electrostatic stabiliser, hydrogen bond acceptor |
A | GLU153 | electrostatic stabiliser, hydrogen bond acceptor |
A | HIS193 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA2 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
B | ASN9 | electrostatic stabiliser, hydrogen bond donor |
B | HIS12 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
B | HIS45 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
B | ARG47 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
B | ARG51 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
B | GLU72 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
B | THR103 | electrostatic stabiliser, hydrogen bond acceptor |
B | GLU153 | electrostatic stabiliser, hydrogen bond acceptor |
B | HIS193 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA3 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
C | ASN9 | electrostatic stabiliser, hydrogen bond donor |
C | HIS12 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
C | HIS45 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
C | ARG47 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
C | ARG51 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
C | GLU72 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
C | THR103 | electrostatic stabiliser, hydrogen bond acceptor |
C | GLU153 | electrostatic stabiliser, hydrogen bond acceptor |
C | HIS193 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA4 |
Number of Residues | 9 |
Details | M-CSA 243 |
Chain | Residue | Details |
D | ASN9 | electrostatic stabiliser, hydrogen bond donor |
D | HIS12 | attractive charge-charge interaction, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
D | HIS45 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
D | ARG47 | attractive charge-charge interaction, electrostatic stabiliser, increase acidity, increase basicity |
D | ARG51 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase acidity, increase basicity |
D | GLU72 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, proton relay |
D | THR103 | electrostatic stabiliser, hydrogen bond acceptor |
D | GLU153 | electrostatic stabiliser, hydrogen bond acceptor |
D | HIS193 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |