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1INI

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHETASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS, COMPLEXED WITH CDP-ME AND MG2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0008299biological_processisoprenoid biosynthetic process
A0016779molecular_functionnucleotidyltransferase activity
A0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
A0042802molecular_functionidentical protein binding
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
AARG20
ACDM1001

site_idAC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE CDM A 1001
ChainResidue
AASP83
AGLU84
AARG85
ASER88
AASP106
AALA107
AALA108
AARG109
AASP139
ATHR140
AARG157
AALA163
ATHR189
ALYS213
ATHR215
AMG1002
APRO13
AALA14
AALA15
AGLY16
AARG20
ALYS27
AGLY82

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VLVHDAAR
ChainResidueDetails
AVAL102-ARG109

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000269|PubMed:11427897
ChainResidueDetails
AARG20
ALYS27

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000269|PubMed:11427897
ChainResidueDetails
AARG157
ALYS213

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
AARG20

223166

PDB entries from 2024-07-31

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