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1IIC

Crystal Structure of Saccharomyces cerevisiae N-myristoyltransferase with Bound MyristoylCoA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues28
DetailsBINDING SITE FOR RESIDUE MYA A 500
ChainResidue
AHIS38
ACYS172
AVAL173
AARG178
ASER179
ALYS180
AARG181
ALEU182
ATHR183
APRO184
ATHR191
ALYS39
ATRP200
AHIS201
ATYR204
ATHR205
AILE208
ALEU210
APHE425
AHOH558
AHOH575
APHE40
ATRP41
ATYR103
AILE168
AASN169
APHE170
ALEU171

site_idAC2
Number of Residues30
DetailsBINDING SITE FOR RESIDUE MYA B 600
ChainResidue
BHIS38
BLYS39
BPHE40
BTRP41
BASN102
BTYR103
BGLU105
BILE168
BPHE170
BLEU171
BVAL173
BARG178
BSER179
BLYS180
BARG181
BLEU182
BTHR183
BPRO184
BILE187
BTHR191
BTRP200
BHIS201
BALA202
BTYR204
BTHR205
BILE208
BLEU210
BPHE425
BHOH607
BHOH718

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU167-LYS175

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGpGDG
ChainResidueDetails
ALYS412-GLY418

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor; via carboxylate => ECO:0000269|PubMed:11478885
ChainResidueDetails
ALEU455
BLEU455

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AHIS38
BHIS38

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 2nmt
ChainResidueDetails
APHE170
ALEU455
AASN169
ALEU171

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 2nmt
ChainResidueDetails
BPHE170
BLEU455
BASN169
BLEU171

site_idMCSA1
Number of Residues5
DetailsM-CSA 928
ChainResidueDetails
AASN169electrostatic stabiliser
APHE170electrostatic stabiliser
ALEU171electrostatic stabiliser
ATHR205electrostatic stabiliser
ALEU455proton shuttle (general acid/base)

site_idMCSA2
Number of Residues5
DetailsM-CSA 928
ChainResidueDetails
BASN169electrostatic stabiliser
BPHE170electrostatic stabiliser
BLEU171electrostatic stabiliser
BTHR205electrostatic stabiliser
BLEU455proton shuttle (general acid/base)

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PDB entries from 2024-07-17

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