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1I52

CRYSTAL STRUCTURE OF 4-DIPHOSPHOCYTIDYL-2-C-METHYLERYTHRITOL (CDP-ME) SYNTHASE (YGBP) INVOLVED IN MEVALONATE INDEPENDENT ISOPRENOID BIOSYNTHESIS

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0008299biological_processisoprenoid biosynthetic process
A0016114biological_processterpenoid biosynthetic process
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
A0042802molecular_functionidentical protein binding
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 2001
ChainResidue
ALEU46
AGLU172
AHOH2005
AHOH2126
AHOH2128
AHOH2132

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 2002
ChainResidue
AHOH2220
AHOH2251
ACTP1001
AHOH2129
AHOH2219

site_idAC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE CTP A 1001
ChainResidue
APRO13
AALA14
AALA15
AGLY16
APHE17
AGLY18
AARG19
AARG20
ALYS27
AGLY82
AASP83
AGLU84
AARG85
ASER88
AASP106
AALA107
AALA108
AMG2002
AHOH2032
AHOH2143
AHOH2165
AHOH2170
AHOH2248
AHOH2251
AHOH2316

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VLVHDAAR
ChainResidueDetails
AVAL102-ARG109

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000269|PubMed:11427897
ChainResidueDetails
AARG20
ALYS27

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000269|PubMed:11427897
ChainResidueDetails
AARG157
ALYS213

218853

PDB entries from 2024-04-24

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