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1HR0

CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT

Functional Information from GO Data
ChainGOidnamespacecontents
B0003735molecular_functionstructural constituent of ribosome
B0005840cellular_componentribosome
B0006412biological_processtranslation
B0015935cellular_componentsmall ribosomal subunit
B0019843molecular_functionrRNA binding
B0022627cellular_componentcytosolic small ribosomal subunit
B1990904cellular_componentribonucleoprotein complex
C0003676molecular_functionnucleic acid binding
C0003723molecular_functionRNA binding
C0003729molecular_functionmRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0019843molecular_functionrRNA binding
C0022627cellular_componentcytosolic small ribosomal subunit
C1990904cellular_componentribonucleoprotein complex
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0015935cellular_componentsmall ribosomal subunit
D0019843molecular_functionrRNA binding
D0042274biological_processribosomal small subunit biogenesis
D0046872molecular_functionmetal ion binding
D1990904cellular_componentribonucleoprotein complex
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0015935cellular_componentsmall ribosomal subunit
E0019843molecular_functionrRNA binding
E1990904cellular_componentribonucleoprotein complex
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0019843molecular_functionrRNA binding
F0070181molecular_functionsmall ribosomal subunit rRNA binding
F1990904cellular_componentribonucleoprotein complex
G0000049molecular_functiontRNA binding
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0015935cellular_componentsmall ribosomal subunit
G0019843molecular_functionrRNA binding
G1990904cellular_componentribonucleoprotein complex
H0003735molecular_functionstructural constituent of ribosome
H0005737cellular_componentcytoplasm
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0019843molecular_functionrRNA binding
H1990904cellular_componentribonucleoprotein complex
I0000049molecular_functiontRNA binding
I0003723molecular_functionRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005737cellular_componentcytoplasm
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0019843molecular_functionrRNA binding
I0022627cellular_componentcytosolic small ribosomal subunit
I0043232cellular_componentintracellular non-membrane-bounded organelle
I1990904cellular_componentribonucleoprotein complex
J0000049molecular_functiontRNA binding
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0019843molecular_functionrRNA binding
J1990904cellular_componentribonucleoprotein complex
K0003735molecular_functionstructural constituent of ribosome
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0019843molecular_functionrRNA binding
K1990904cellular_componentribonucleoprotein complex
L0000049molecular_functiontRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0015935cellular_componentsmall ribosomal subunit
L0019843molecular_functionrRNA binding
L1990904cellular_componentribonucleoprotein complex
M0000049molecular_functiontRNA binding
M0003676molecular_functionnucleic acid binding
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0015935cellular_componentsmall ribosomal subunit
M0019843molecular_functionrRNA binding
M1990904cellular_componentribonucleoprotein complex
N0003735molecular_functionstructural constituent of ribosome
N0005737cellular_componentcytoplasm
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0008270molecular_functionzinc ion binding
N0015935cellular_componentsmall ribosomal subunit
N0019843molecular_functionrRNA binding
N0046872molecular_functionmetal ion binding
N1990904cellular_componentribonucleoprotein complex
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0019843molecular_functionrRNA binding
O0022627cellular_componentcytosolic small ribosomal subunit
O1990904cellular_componentribonucleoprotein complex
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015935cellular_componentsmall ribosomal subunit
P1990904cellular_componentribonucleoprotein complex
Q0003735molecular_functionstructural constituent of ribosome
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0019843molecular_functionrRNA binding
Q0022627cellular_componentcytosolic small ribosomal subunit
Q1990904cellular_componentribonucleoprotein complex
R0003735molecular_functionstructural constituent of ribosome
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0019843molecular_functionrRNA binding
R0070181molecular_functionsmall ribosomal subunit rRNA binding
R1990904cellular_componentribonucleoprotein complex
S0000028biological_processribosomal small subunit assembly
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005737cellular_componentcytoplasm
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0015935cellular_componentsmall ribosomal subunit
S0019843molecular_functionrRNA binding
S1990904cellular_componentribonucleoprotein complex
T0003723molecular_functionRNA binding
T0003735molecular_functionstructural constituent of ribosome
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0015935cellular_componentsmall ribosomal subunit
T0019843molecular_functionrRNA binding
T0070181molecular_functionsmall ribosomal subunit rRNA binding
T1990904cellular_componentribonucleoprotein complex
V0005840cellular_componentribosome
V0019843molecular_functionrRNA binding
V1990904cellular_componentribonucleoprotein complex
W0003723molecular_functionRNA binding
W0003743molecular_functiontranslation initiation factor activity
W0005737cellular_componentcytoplasm
W0005829cellular_componentcytosol
W0006412biological_processtranslation
W0006413biological_processtranslational initiation
W0019843molecular_functionrRNA binding
W0043022molecular_functionribosome binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG W 72
ChainResidue
AC519
AA520
WLYS2

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1545
ChainResidue
AG944
AG945

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1546
ChainResidue
AG1224

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1547
ChainResidue
AG22
AC23
AG11
AU12
AG21

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1548
ChainResidue
AG664
AG741
AG742

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1550
ChainResidue
AG377

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1551
ChainResidue
AC749
AG750

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1552
ChainResidue
AA766
AC811
AC812

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1553
ChainResidue
AA768

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1556
ChainResidue
AG576
AC578

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1558
ChainResidue
AA509
AA510

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1559
ChainResidue
AU560
AC562
AG566

site_idBC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1560
ChainResidue
AA16

site_idBC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1561
ChainResidue
AG21

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1562
ChainResidue
AG595
AC596
AG597
AU598

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1563
ChainResidue
AG858
AG869

site_idBC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 71
ChainResidue
AA860

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1565
ChainResidue
AG885
AG886
AG887
AC910
AU911

site_idCC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1566
ChainResidue
AA937

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1567
ChainResidue
AC934
AU1345

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1568
ChainResidue
AC934
AC1344

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1569
ChainResidue
AC936
AG1343

site_idCC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1570
ChainResidue
AG1370
AG1371

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 86
ChainResidue
AG588

site_idCC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 87
ChainResidue
AC651

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1573
ChainResidue
AA964
AU1199

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1574
ChainResidue
AC979
AC980
AU981
AU982
AG1222

site_idDC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1575
ChainResidue
AC980

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1576
ChainResidue
AG1053
AC1054
AG1197

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1577
ChainResidue
AC1054
AU1196
AG1197
AG1198

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1578
ChainResidue
AG299
AG557
AG558
AU560

site_idDC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1579
ChainResidue
AG324

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1580
ChainResidue
AA1396
AC1397
AA1398
AG1401
AC1402
AMG1581

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1581
ChainResidue
AC1397
AA1398
AG1401
AMG1580

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1582
ChainResidue
AU516
AG517
AA532
AA533

site_idDC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1583
ChainResidue
AA572
AA573
AA574

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1584
ChainResidue
AG898
AA900

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1585
ChainResidue
AA1110

site_idEC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1586
ChainResidue
AA865
AC866
AG1079

site_idEC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1587
ChainResidue
AG1387
AA1067
AG1068
AG1094

site_idEC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1588
ChainResidue
AU1095
AG1108

site_idEC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1589
ChainResidue
AG286
AU287

site_idEC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG A 1590
ChainResidue
AG1526

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1591
ChainResidue
AU1510
AG1511
AU1512
AU1522
AG1523
AC1524

site_idEC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1592
ChainResidue
AA1499
AA1500
AG1508
AG1521
AMG1594

site_idFC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1593
ChainResidue
AU1498
AA1499

site_idFC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1594
ChainResidue
AA1500
AG1504
AG1505
AA1507
AG1508
AMG1592

site_idFC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1596
ChainResidue
AG181
AA195

site_idFC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1597
ChainResidue
AU182
AG183

site_idFC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1598
ChainResidue
AA116
AG117
AG289

site_idFC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1599
ChainResidue
AG351
AC352

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1600
ChainResidue
AC372
AU375
AG376
AU387

site_idFC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1602
ChainResidue
AA782
AA794

site_idFC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1603
ChainResidue
AG1058
AC1059
AG1198
AU1199

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1604
ChainResidue
AC1303
AG1304
VASP5

site_idGC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 1605
ChainResidue
AA563
AC564
AU565

site_idGC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN N 190
ChainResidue
NCYS24
NCYS27
NCYS40
NCYS43

site_idGC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 300
ChainResidue
DCYS9
DCYS12
DCYS26
DCYS31

Functional Information from PROSITE/UniProt
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. DvLvtaFInkimrdGKKnlaarIFydA
ChainResidueDetails
GASP20-ALA46

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaILSTSkGVLtdreAR
ChainResidueDetails
HGLY108-ARG125

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaS.GLqVksivDdTPvPHN
ChainResidueDetails
KILE95-ASN117

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
LLYS46-ARG53

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIiEsRPIS
ChainResidueDetails
QGLY54-SER66

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. RDYrn.VevLkrFLSEt.GKIlprRR
ChainResidueDetails
RARG32-ARG55

site_idPS00063
Number of Residues16
DetailsALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LAKTIKraRIlGLlPF
ChainResidueDetails
RLEU66-PHE81

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKqhvpvyItenmVGhkLGEFapT
ChainResidueDetails
SASN53-THR77

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGksGQidAiklGiARAL
ChainResidueDetails
IGLY67-LEU85

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. ArrsGAqvsGPIpLPT
ChainResidueDetails
JALA27-THR42

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LseHLkvhKkDhhShrgLlmMvgqrrrLlrY
ChainResidueDetails
OLEU39-TYR69

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvrcgrarsvyrfFGLCRiCLR
ChainResidueDetails
NARG23-ARG45

site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewaaqGrVplHt..LranIDygfalarTtyGvlG
ChainResidueDetails
CALA163-GLY197

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFgAlvVVGDrq.GrVGlGfgkap.EVpl.AV
ChainResidueDetails
EGLY23-VAL55

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
ChainResidueDetails
DLEU97-VAL121

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
ChainResidueDetails
MARG88-GLN101

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkELLEAGVHFG
ChainResidueDetails
BVAL7-GLY18

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GlRRLAYpIA
ChainResidueDetails
FGLY44-ALA53

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:11866529
ChainResidueDetails
DCYS9
DCYS12
DCYS26
DCYS31

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: 3-methylthioaspartic acid => ECO:0000269|PubMed:16287167, ECO:0000269|PubMed:25775268
ChainResidueDetails
LASP92

227344

PDB entries from 2024-11-13

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