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1HO5

5'-NUCLEOTIDASE (E. COLI) IN COMPLEX WITH ADENOSINE AND PHOSPHATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008252molecular_functionnucleotidase activity
A0008253molecular_function5'-nucleotidase activity
A0008768molecular_functionUDP-sugar diphosphatase activity
A0009166biological_processnucleotide catabolic process
A0016787molecular_functionhydrolase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
A0106411molecular_functionXMP 5'-nucleosidase activity
B0000166molecular_functionnucleotide binding
B0008252molecular_functionnucleotidase activity
B0008253molecular_function5'-nucleotidase activity
B0008768molecular_functionUDP-sugar diphosphatase activity
B0009166biological_processnucleotide catabolic process
B0016787molecular_functionhydrolase activity
B0016788molecular_functionhydrolase activity, acting on ester bonds
B0030288cellular_componentouter membrane-bounded periplasmic space
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
B0106411molecular_functionXMP 5'-nucleosidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 1601
ChainResidue
AASP41
AHIS43
AASP84
AGLN254
AMN1602
AHOH1775
AHOH1823

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 1602
ChainResidue
AHIS217
AHIS252
AMN1601
APO41603
AHOH1823
AASP84
AASN116

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A 1603
ChainResidue
AASP84
AASN116
AHIS117
AHIS252
AARG375
AMN1602
AADN1604
AHOH1741
AHOH1775
AHOH1823

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 2601
ChainResidue
BASP41
BHIS43
BASP84
BGLN254
BMN2602
BHOH2704

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN B 2602
ChainResidue
BASP84
BASN116
BHIS217
BHIS252
BMN2601
BPO42603
BHOH2704

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 B 2603
ChainResidue
BASP84
BASN116
BHIS117
BILE178
BHIS252
BMN2602
BADN2604
BHOH2704
BHOH2718

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ADN A 1604
ChainResidue
AILE178
ASER405
AGLY407
APHE429
AASN431
AGLY458
APHE498
AASP504
APO41603
AHOH1756

site_idAC8
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ADN B 2604
ChainResidue
BILE178
BASN180
BSER405
BGLY407
BARG410
BPHE429
BASN431
BGLY458
BPHE498
BASP504
BPO42603
BHOH2718

Functional Information from PROSITE/UniProt
site_idPS00785
Number of Residues13
Details5_NUCLEOTIDASE_1 5'-nucleotidase signature 1. ItVLHTnDhHGhF
ChainResidueDetails
AILE34-PHE46

site_idPS00786
Number of Residues12
Details5_NUCLEOTIDASE_2 5'-nucleotidase signature 2. YdamaIGNHEFD
ChainResidueDetails
ATYR109-ASP120

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING:
ChainResidueDetails
AASP41
BASP41
BHIS43
BASP84
BASN116
BHIS217
BHIS252
BGLN254
BARG375
BPHE498
AHIS43
AASP84
AASN116
AHIS217
AHIS252
AGLN254
AARG375
APHE498

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Transition state stabilizer
ChainResidueDetails
AHIS117
AASP120
BHIS117
BASP120

Catalytic Information from CSA
site_idMCSA1
Number of Residues12
DetailsM-CSA 611
ChainResidueDetails
AASP41metal ligand
AARG375electrostatic stabiliser, increase acidity, increase electrophilicity
AARG379electrostatic stabiliser, increase acidity, increase electrophilicity
AARG410electrostatic stabiliser, increase acidity, increase electrophilicity
AHIS43metal ligand
AASP84metal ligand
AASN116electrostatic stabiliser, metal ligand
AHIS117electrostatic stabiliser, increase nucleophilicity, metal ligand, proton acceptor
AASP120electrostatic stabiliser, increase basicity
AHIS217metal ligand
AHIS252metal ligand
AGLN254metal ligand

site_idMCSA2
Number of Residues12
DetailsM-CSA 611
ChainResidueDetails
BASP41metal ligand
BARG375electrostatic stabiliser, increase acidity, increase electrophilicity
BARG379electrostatic stabiliser, increase acidity, increase electrophilicity
BARG410electrostatic stabiliser, increase acidity, increase electrophilicity
BHIS43metal ligand
BASP84metal ligand
BASN116electrostatic stabiliser, metal ligand
BHIS117electrostatic stabiliser, increase nucleophilicity, metal ligand, proton acceptor
BASP120electrostatic stabiliser, increase basicity
BHIS217metal ligand
BHIS252metal ligand
BGLN254metal ligand

218853

PDB entries from 2024-04-24

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