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1HE5

Human biliverdin IX beta reductase: NADP/Lumichrome ternary complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0004074molecular_functionbiliverdin reductase [NAD(P)H] activity
A0005515molecular_functionprotein binding
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0016491molecular_functionoxidoreductase activity
A0016740molecular_functiontransferase activity
A0030219biological_processmegakaryocyte differentiation
A0035605molecular_functionpeptidyl-cysteine S-nitrosylase activity
A0042167biological_processheme catabolic process
A0042602molecular_functionriboflavin reductase (NADPH) activity
A0046627biological_processnegative regulation of insulin receptor signaling pathway
A0052873molecular_functionFMN reductase (NADPH) activity
A0052874molecular_functionFMN reductase (NADH) activity
A0070062cellular_componentextracellular exosome
Functional Information from PDB Data
site_idAC1
Number of Residues34
DetailsBINDING SITE FOR RESIDUE NAP A1206
ChainResidue
AGLY10
ALEU74
ALEU75
AGLY76
AARG78
AMET87
ACYS109
ATHR110
ASER111
AHIS132
APRO151
ATHR12
APRO152
AHIS153
AILE154
ALUM1207
AHOH2028
AHOH2065
AHOH2262
AHOH2263
AHOH2264
AHOH2265
AGLY13
AHOH2266
AHOH2267
AHOH2268
AHOH2269
AHOH2270
AGLN14
ATHR15
AARG35
AARG39
AASP54
AVAL55

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE LUM A1207
ChainResidue
ASER111
AALA112
APHE113
ATRP116
AVAL128
AHIS132
APRO151
APRO152
AHIS153
ANAP1206
AHOH2271

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"S-nitroso-cysteine intermediate; for S-nitroso-CoA-dependent nitrosyltransferase activity","evidences":[{"source":"PubMed","id":"38056462","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29487133","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HDO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29487133","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HDO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HDO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29487133","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HDO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"29487133","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HDO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29487133","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HDO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1HE5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11224564","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29487133","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HE3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5OOH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ER9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"32246827","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34957824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6OPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7ERD","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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