1H17
Pyruvate Formate-Lyase (E.coli) in complex with CoA and the substrate analog oxamate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0006006 | biological_process | glucose metabolic process |
| A | 0008861 | molecular_function | formate C-acetyltransferase activity |
| A | 0016020 | cellular_component | membrane |
| A | 0016746 | molecular_function | acyltransferase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA A 9001 |
| Chain | Residue |
| A | ALA652 |
| A | LEU654 |
| A | GLU700 |
| A | GLY701 |
| A | HOH3085 |
| A | HOH3157 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 9002 |
| Chain | Residue |
| A | HOH2588 |
| A | HOH2912 |
| A | GLU214 |
| A | GLN215 |
| A | ARG218 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 9003 |
| Chain | Residue |
| A | THR80 |
| A | ILE81 |
| A | SER268 |
| A | HOH2313 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 9004 |
| Chain | Residue |
| A | LEU688 |
| A | HOH2298 |
| A | HOH3133 |
| A | PG49013 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 9005 |
| Chain | Residue |
| A | GLN589 |
| A | PRO599 |
| A | HOH2550 |
| A | HOH3021 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 9006 |
| Chain | Residue |
| A | MET58 |
| A | LYS62 |
| A | HOH2088 |
| A | HOH2243 |
| A | HOH3191 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE NA A 9007 |
| Chain | Residue |
| A | GLN269 |
| A | HOH2136 |
| A | HOH2138 |
| A | HOH2921 |
| A | HOH2922 |
| A | HOH2923 |
| A | HOH3252 |
| A | HOH3253 |
| A | HOH3254 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MG A 9008 |
| Chain | Residue |
| A | COA1000 |
| A | HOH2491 |
| A | HOH3246 |
| site_id | AC9 |
| Number of Residues | 27 |
| Details | BINDING SITE FOR RESIDUE COA A 1000 |
| Chain | Residue |
| A | LYS116 |
| A | MET117 |
| A | ASN145 |
| A | GLN146 |
| A | PHE149 |
| A | ASP150 |
| A | TYR152 |
| A | ARG160 |
| A | LYS161 |
| A | PHE200 |
| A | HIS227 |
| A | HOH2491 |
| A | HOH2746 |
| A | HOH3233 |
| A | HOH3234 |
| A | HOH3235 |
| A | HOH3236 |
| A | HOH3237 |
| A | HOH3238 |
| A | HOH3240 |
| A | HOH3241 |
| A | HOH3242 |
| A | HOH3243 |
| A | HOH3244 |
| A | HOH3245 |
| A | HOH3247 |
| A | MG9008 |
| site_id | BC1 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE OXM A 1001 |
| Chain | Residue |
| A | ARG176 |
| A | ALA272 |
| A | ALA273 |
| A | CYS418 |
| A | PHE432 |
| A | ARG435 |
| A | LEU604 |
| A | ILE606 |
| A | HOH3248 |
| site_id | BC2 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE DTL A 9009 |
| Chain | Residue |
| A | THR138 |
| A | GLU139 |
| A | LYS142 |
| A | GLU225 |
| A | ARG228 |
| A | GLN232 |
| A | HOH2451 |
| A | HOH2452 |
| A | HOH3249 |
| A | HOH3250 |
| A | HOH3251 |
| A | HOH3253 |
| site_id | BC3 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE DTL A 9010 |
| Chain | Residue |
| A | HIS68 |
| A | PRO70 |
| A | TYR125 |
| A | ASP324 |
| A | ASP330 |
| A | SER741 |
| A | HOH2282 |
| A | HOH3256 |
| A | HOH3257 |
| A | HOH3258 |
| A | HOH3259 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE PG4 A 9011 |
| Chain | Residue |
| A | GLU40 |
| A | LEU43 |
| A | HOH3260 |
| site_id | BC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE PG4 A 9012 |
| Chain | Residue |
| A | ALA198 |
| A | GLN199 |
| A | SER202 |
| A | ARG516 |
| A | ASP517 |
| A | HOH2941 |
| A | HOH3263 |
| A | HOH3265 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PG4 A 9013 |
| Chain | Residue |
| A | LEU648 |
| A | THR649 |
| A | LEU688 |
| A | GLY691 |
| A | TYR692 |
| A | HOH3267 |
| A | NA9004 |
Functional Information from PROSITE/UniProt
| site_id | PS00850 |
| Number of Residues | 9 |
| Details | GLY_RADICAL_1 Glycine radical domain signature. TiRVSGYAV |
| Chain | Residue | Details |
| A | THR729-VAL737 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | ACT_SITE: S-acetylcysteine intermediate => ECO:0000269|PubMed:1310545 |
| Chain | Residue | Details |
| A | CYS419 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | ACT_SITE: Cysteine radical intermediate => ECO:0000269|PubMed:1310545 |
| Chain | Residue | Details |
| A | VAL420 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:21151122 |
| Chain | Residue | Details |
| A | LEU63 | |
| A | MET117 | |
| A | ASP195 | |
| A | LEU454 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:21151122 |
| Chain | Residue | Details |
| A | ARG107 | |
| A | ALA124 | |
| A | GLY467 | |
| A | LEU654 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842 |
| Chain | Residue | Details |
| A | TYR541 | |
| A | LEU591 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 1 |
| Details | MOD_RES: Glycine radical => ECO:0000269|PubMed:1310545 |
| Chain | Residue | Details |
| A | TYR735 |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 4 |
| Details | M-CSA 30 |
| Chain | Residue | Details |
| A | ALA334 | hydrogen bond donor, radical stabiliser |
| A | CYS419 | covalently attached, hydrogen bond acceptor, hydrogen bond donor, hydrogen radical acceptor, hydrogen radical donor, leaving group (radical), radical combinant |
| A | VAL420 | hydrogen bond acceptor, hydrogen bond donor, hydrogen radical acceptor, hydrogen radical donor, hydrogen radical relay |
| A | TYR735 | hydrogen bond acceptor, hydrogen bond donor, hydrogen radical acceptor, hydrogen radical donor |
| site_id | CSA1 |
| Number of Residues | 4 |
| Details | Annotated By Reference To The Literature 2pfl |
| Chain | Residue | Details |
| A | CYS419 | |
| A | GLY734 | |
| A | TRP333 | |
| A | CYS418 |
