1GU6
Structure of the Periplasmic Cytochrome c Nitrite Reductase from Escherichia coli
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005506 | molecular_function | iron ion binding |
A | 0005509 | molecular_function | calcium ion binding |
A | 0009061 | biological_process | anaerobic respiration |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016966 | molecular_function | nitric oxide reductase activity |
A | 0019645 | biological_process | anaerobic electron transport chain |
A | 0020037 | molecular_function | heme binding |
A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
A | 0042128 | biological_process | nitrate assimilation |
A | 0042279 | molecular_function | nitrite reductase (cytochrome, ammonia-forming) activity |
A | 0042597 | cellular_component | periplasmic space |
A | 0046872 | molecular_function | metal ion binding |
C | 0005506 | molecular_function | iron ion binding |
C | 0005509 | molecular_function | calcium ion binding |
C | 0009061 | biological_process | anaerobic respiration |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016966 | molecular_function | nitric oxide reductase activity |
C | 0019645 | biological_process | anaerobic electron transport chain |
C | 0020037 | molecular_function | heme binding |
C | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
C | 0042128 | biological_process | nitrate assimilation |
C | 0042279 | molecular_function | nitrite reductase (cytochrome, ammonia-forming) activity |
C | 0042597 | cellular_component | periplasmic space |
C | 0046872 | molecular_function | metal ion binding |
E | 0005506 | molecular_function | iron ion binding |
E | 0005509 | molecular_function | calcium ion binding |
E | 0009061 | biological_process | anaerobic respiration |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016966 | molecular_function | nitric oxide reductase activity |
E | 0019645 | biological_process | anaerobic electron transport chain |
E | 0020037 | molecular_function | heme binding |
E | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
E | 0042128 | biological_process | nitrate assimilation |
E | 0042279 | molecular_function | nitrite reductase (cytochrome, ammonia-forming) activity |
E | 0042597 | cellular_component | periplasmic space |
E | 0046872 | molecular_function | metal ion binding |
G | 0005506 | molecular_function | iron ion binding |
G | 0005509 | molecular_function | calcium ion binding |
G | 0009061 | biological_process | anaerobic respiration |
G | 0016491 | molecular_function | oxidoreductase activity |
G | 0016966 | molecular_function | nitric oxide reductase activity |
G | 0019645 | biological_process | anaerobic electron transport chain |
G | 0020037 | molecular_function | heme binding |
G | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
G | 0042128 | biological_process | nitrate assimilation |
G | 0042279 | molecular_function | nitrite reductase (cytochrome, ammonia-forming) activity |
G | 0042597 | cellular_component | periplasmic space |
G | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA A 1479 |
Chain | Residue |
A | GLU215 |
A | TYR216 |
A | LYS261 |
A | GLN263 |
A | HOH2081 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA A 1480 |
Chain | Residue |
A | PRO91 |
A | HEC1484 |
A | HEC1485 |
A | HOH2160 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA C 1479 |
Chain | Residue |
C | GLU215 |
C | TYR216 |
C | LYS261 |
C | GLN263 |
C | HOH2060 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA C 1480 |
Chain | Residue |
C | PRO91 |
C | HEC1484 |
C | HEC1485 |
C | HOH2120 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA E 1479 |
Chain | Residue |
E | GLU215 |
E | TYR216 |
E | LYS261 |
E | GLN263 |
E | HOH2109 |
E | HOH2111 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA E 1480 |
Chain | Residue |
E | PRO91 |
E | HEC1484 |
E | HEC1485 |
E | HOH2186 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA G 1479 |
Chain | Residue |
G | GLU215 |
G | TYR216 |
G | LYS261 |
G | GLN263 |
G | HOH2110 |
G | HOH2112 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA G 1480 |
Chain | Residue |
G | PRO91 |
G | HEC1484 |
G | HEC1485 |
G | HOH2198 |
site_id | AC9 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE HEC A 1482 |
Chain | Residue |
A | TYR88 |
A | ASN89 |
A | PRO91 |
A | ASP100 |
A | THR104 |
A | ARG106 |
A | CYS122 |
A | CYS125 |
A | LYS126 |
A | CYS212 |
A | HIS213 |
A | TYR216 |
A | PHE218 |
A | HIS264 |
A | HIS388 |
A | HEC1484 |
A | HOH2024 |
A | HOH2026 |
A | HOH2041 |
A | HOH2156 |
A | HOH2157 |
A | HOH2158 |
A | HOH2159 |
site_id | BC1 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE HEC A 1483 |
Chain | Residue |
A | HIS49 |
A | GLN52 |
A | TRP56 |
A | GLY159 |
A | CYS160 |
A | CYS163 |
A | HIS164 |
A | GLY174 |
A | ARG201 |
A | GLN205 |
A | ILE283 |
A | LYS289 |
A | TYR298 |
A | THR299 |
A | HIS301 |
A | HEC1484 |
site_id | BC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC A 1484 |
Chain | Residue |
A | GLN62 |
A | PRO91 |
A | ARG92 |
A | GLY93 |
A | HIS94 |
A | PHE96 |
A | ALA97 |
A | ASP100 |
A | CYS125 |
A | LYS126 |
A | LEU158 |
A | VAL208 |
A | CYS209 |
A | CYS212 |
A | HIS213 |
A | HIS286 |
A | ILE303 |
A | CA1480 |
A | HEC1482 |
A | HEC1483 |
A | HEC1485 |
A | HOH2160 |
site_id | BC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE HEC A 1485 |
Chain | Residue |
A | HIS213 |
A | GLU266 |
A | TRP270 |
A | HIS275 |
A | VAL280 |
A | THR281 |
A | CYS282 |
A | CYS285 |
A | HIS286 |
A | ASN305 |
A | HIS388 |
A | HIS391 |
A | MET392 |
A | HIS393 |
A | CA1480 |
A | HEC1484 |
A | HOH2161 |
site_id | BC4 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE HEC A 1486 |
Chain | Residue |
A | ILE274 |
A | HIS275 |
A | VAL280 |
A | THR313 |
A | CYS314 |
A | CYS317 |
A | HIS318 |
A | ARG332 |
A | HOH2162 |
A | HOH2163 |
G | HIS318 |
G | GLN320 |
G | HEC1486 |
site_id | BC5 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE HEC C 1482 |
Chain | Residue |
C | TYR88 |
C | ASN89 |
C | PRO91 |
C | THR104 |
C | ARG106 |
C | CYS122 |
C | CYS125 |
C | LYS126 |
C | CYS212 |
C | HIS213 |
C | TYR216 |
C | PHE218 |
C | HIS264 |
C | HEC1484 |
C | HOH2030 |
C | HOH2116 |
C | HOH2117 |
C | HOH2118 |
C | HOH2119 |
site_id | BC6 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE HEC C 1483 |
Chain | Residue |
C | HIS49 |
C | GLN52 |
C | TRP56 |
C | GLY159 |
C | CYS160 |
C | CYS163 |
C | HIS164 |
C | GLY174 |
C | ARG201 |
C | GLN205 |
C | ILE283 |
C | LYS289 |
C | TYR298 |
C | THR299 |
C | HIS301 |
site_id | BC7 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE HEC C 1484 |
Chain | Residue |
C | GLN62 |
C | PRO91 |
C | ARG92 |
C | GLY93 |
C | HIS94 |
C | PHE96 |
C | ALA97 |
C | ASP100 |
C | CYS125 |
C | LYS126 |
C | LEU158 |
C | VAL208 |
C | CYS209 |
C | CYS212 |
C | HIS213 |
C | HIS286 |
C | ILE303 |
C | CA1480 |
C | HEC1482 |
C | HEC1485 |
C | HOH2120 |
site_id | BC8 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE HEC C 1485 |
Chain | Residue |
C | HIS213 |
C | GLU266 |
C | TRP270 |
C | HIS275 |
C | VAL280 |
C | THR281 |
C | CYS282 |
C | CYS285 |
C | HIS286 |
C | ASN305 |
C | PHE307 |
C | HIS388 |
C | HIS391 |
C | MET392 |
C | HIS393 |
C | CA1480 |
C | HEC1484 |
site_id | BC9 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE HEC C 1486 |
Chain | Residue |
C | ILE274 |
C | HIS275 |
C | VAL280 |
C | PHE307 |
C | THR313 |
C | CYS314 |
C | CYS317 |
C | HIS318 |
C | ARG332 |
C | HOH2121 |
E | HIS318 |
E | GLN320 |
E | HEC1486 |
site_id | CC1 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE HEC E 1482 |
Chain | Residue |
E | TYR88 |
E | ASN89 |
E | PRO91 |
E | ASP100 |
E | THR104 |
E | ARG106 |
E | ALA121 |
E | CYS122 |
E | CYS125 |
E | LYS126 |
E | CYS212 |
E | HIS213 |
E | TYR216 |
E | PHE218 |
E | HIS264 |
E | HEC1484 |
E | HOH2031 |
E | HOH2056 |
E | HOH2155 |
E | HOH2179 |
E | HOH2180 |
E | HOH2181 |
E | HOH2182 |
E | HOH2183 |
site_id | CC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE HEC E 1483 |
Chain | Residue |
E | HIS49 |
E | GLN52 |
E | TRP56 |
E | GLY159 |
E | CYS160 |
E | CYS163 |
E | HIS164 |
E | GLY174 |
E | ARG201 |
E | GLN205 |
E | ILE283 |
E | MET287 |
E | LYS289 |
E | TYR298 |
E | THR299 |
E | HIS301 |
E | HEC1484 |
E | HOH2184 |
E | HOH2185 |
site_id | CC3 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC E 1484 |
Chain | Residue |
E | GLN62 |
E | PRO91 |
E | ARG92 |
E | GLY93 |
E | HIS94 |
E | PHE96 |
E | ALA97 |
E | ASP100 |
E | CYS125 |
E | LEU158 |
E | VAL208 |
E | CYS209 |
E | CYS212 |
E | HIS213 |
E | HIS286 |
E | ILE303 |
E | CA1480 |
E | HEC1482 |
E | HEC1483 |
E | HEC1485 |
E | HOH2037 |
E | HOH2186 |
site_id | CC4 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE HEC E 1485 |
Chain | Residue |
E | HIS213 |
E | GLU266 |
E | TRP270 |
E | HIS275 |
E | VAL280 |
E | THR281 |
E | CYS282 |
E | CYS285 |
E | HIS286 |
E | ASN305 |
E | PHE307 |
E | HIS388 |
E | HIS391 |
E | MET392 |
E | HIS393 |
E | CA1480 |
E | HEC1484 |
E | HOH2188 |
site_id | CC5 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE HEC E 1486 |
Chain | Residue |
C | HIS318 |
C | GLN320 |
C | HEC1486 |
E | ILE274 |
E | HIS275 |
E | VAL280 |
E | THR313 |
E | CYS314 |
E | CYS317 |
E | HIS318 |
E | ARG332 |
E | HOH2189 |
E | HOH2190 |
E | HOH2191 |
site_id | CC6 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC G 1482 |
Chain | Residue |
G | TYR88 |
G | ASN89 |
G | PRO91 |
G | THR104 |
G | ARG106 |
G | CYS122 |
G | CYS125 |
G | LYS126 |
G | CYS212 |
G | HIS213 |
G | TYR216 |
G | PHE218 |
G | HIS264 |
G | HEC1484 |
G | HOH2034 |
G | HOH2051 |
G | HOH2168 |
G | HOH2191 |
G | HOH2192 |
G | HOH2193 |
G | HOH2194 |
G | HOH2195 |
site_id | CC7 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE HEC G 1483 |
Chain | Residue |
G | HIS49 |
G | GLN52 |
G | TRP56 |
G | GLY159 |
G | CYS160 |
G | CYS163 |
G | HIS164 |
G | GLY174 |
G | ARG201 |
G | GLN205 |
G | ILE283 |
G | MET287 |
G | LYS289 |
G | TYR298 |
G | THR299 |
G | HIS301 |
G | HEC1484 |
G | HOH2196 |
G | HOH2197 |
site_id | CC8 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE HEC G 1484 |
Chain | Residue |
G | GLN62 |
G | PRO91 |
G | ARG92 |
G | GLY93 |
G | HIS94 |
G | PHE96 |
G | ALA97 |
G | ASP100 |
G | CYS125 |
G | LYS126 |
G | LEU158 |
G | VAL208 |
G | CYS209 |
G | CYS212 |
G | HIS213 |
G | HIS286 |
G | ILE303 |
G | CA1480 |
G | HEC1482 |
G | HEC1483 |
G | HEC1485 |
G | HOH2200 |
site_id | CC9 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE HEC G 1485 |
Chain | Residue |
G | HIS213 |
G | GLU266 |
G | TRP270 |
G | HIS275 |
G | VAL280 |
G | THR281 |
G | CYS282 |
G | CYS285 |
G | HIS286 |
G | ASN305 |
G | HIS388 |
G | HIS391 |
G | MET392 |
G | HIS393 |
G | CA1480 |
G | HEC1484 |
G | HOH2201 |
G | HOH2202 |
site_id | DC1 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE HEC G 1486 |
Chain | Residue |
A | HIS318 |
A | GLN320 |
A | HEC1486 |
G | ILE274 |
G | HIS275 |
G | VAL280 |
G | THR313 |
G | CYS314 |
G | CYS317 |
G | HIS318 |
G | ARG332 |
G | HOH2203 |
site_id | DC2 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL A 1481 |
Chain | Residue |
A | MET233 |
A | LYS234 |
A | VAL235 |
A | GLU268 |
A | THR269 |
A | ALA272 |
A | GLU397 |
A | ARG400 |
A | MET401 |
A | HOH2155 |
site_id | DC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL C 1481 |
Chain | Residue |
C | MET233 |
C | LYS234 |
C | VAL235 |
C | GLU268 |
C | THR269 |
C | ALA272 |
C | GLU397 |
C | ARG400 |
C | MET401 |
site_id | DC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL E 1481 |
Chain | Residue |
E | MET233 |
E | LYS234 |
E | VAL235 |
E | GLU268 |
E | THR269 |
E | ALA272 |
E | GLU397 |
E | ARG400 |
E | MET401 |
E | HOH2178 |
site_id | DC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL G 1481 |
Chain | Residue |
G | MET233 |
G | LYS234 |
G | VAL235 |
G | GLU268 |
G | THR269 |
G | ALA272 |
G | GLU397 |
G | ARG400 |
G | MET401 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 36 |
Details | BINDING: axial binding residue => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR |
Chain | Residue | Details |
A | HIS94 | |
C | HIS94 | |
C | LYS126 | |
C | HIS164 | |
C | HIS213 | |
C | HIS275 | |
C | HIS286 | |
C | HIS301 | |
C | HIS318 | |
C | HIS393 | |
E | HIS94 | |
A | LYS126 | |
E | LYS126 | |
E | HIS164 | |
E | HIS213 | |
E | HIS275 | |
E | HIS286 | |
E | HIS301 | |
E | HIS318 | |
E | HIS393 | |
G | HIS94 | |
G | LYS126 | |
A | HIS164 | |
G | HIS164 | |
G | HIS213 | |
G | HIS275 | |
G | HIS286 | |
G | HIS301 | |
G | HIS318 | |
G | HIS393 | |
A | HIS213 | |
A | HIS275 | |
A | HIS286 | |
A | HIS301 | |
A | HIS318 | |
A | HIS393 |
site_id | SWS_FT_FI2 |
Number of Residues | 32 |
Details | BINDING: covalent => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR |
Chain | Residue | Details |
A | CYS122 | |
C | CYS125 | |
C | CYS160 | |
C | CYS163 | |
C | CYS209 | |
C | CYS212 | |
C | CYS282 | |
C | CYS314 | |
E | CYS122 | |
E | CYS125 | |
E | CYS160 | |
A | CYS125 | |
E | CYS163 | |
E | CYS209 | |
E | CYS212 | |
E | CYS282 | |
E | CYS314 | |
G | CYS122 | |
G | CYS125 | |
G | CYS160 | |
G | CYS163 | |
G | CYS209 | |
A | CYS160 | |
G | CYS212 | |
G | CYS282 | |
G | CYS314 | |
A | CYS163 | |
A | CYS209 | |
A | CYS212 | |
A | CYS282 | |
A | CYS314 | |
C | CYS122 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR |
Chain | Residue | Details |
A | GLU215 | |
A | LYS261 | |
C | GLU215 | |
C | LYS261 | |
E | GLU215 | |
E | LYS261 | |
G | GLU215 | |
G | LYS261 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | TYR216 | |
A | HIS264 | |
C | TYR216 | |
C | HIS264 | |
E | TYR216 | |
E | HIS264 | |
G | TYR216 | |
G | HIS264 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:3L1T, ECO:0007744|PDB:3TOR |
Chain | Residue | Details |
A | GLN263 | |
C | GLN263 | |
E | GLN263 | |
G | GLN263 |
site_id | SWS_FT_FI6 |
Number of Residues | 8 |
Details | BINDING: covalent => ECO:0007744|PDB:1GU6, ECO:0007744|PDB:2RDZ, ECO:0007744|PDB:2RF7 |
Chain | Residue | Details |
A | CYS285 | |
A | CYS317 | |
C | CYS285 | |
C | CYS317 | |
E | CYS285 | |
E | CYS317 | |
G | CYS285 | |
G | CYS317 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1fgj |
Chain | Residue | Details |
G | HIS427 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1fgj |
Chain | Residue | Details |
A | HIS427 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1fgj |
Chain | Residue | Details |
C | HIS427 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1fgj |
Chain | Residue | Details |
E | HIS427 |