1GKP
D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group C2221
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
A | 0046872 | molecular_function | metal ion binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
B | 0046872 | molecular_function | metal ion binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
C | 0046872 | molecular_function | metal ion binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
D | 0046872 | molecular_function | metal ion binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
E | 0046872 | molecular_function | metal ion binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN A1460 |
Chain | Residue |
A | KCX150 |
A | HIS183 |
A | HIS239 |
A | ZN1461 |
A | HOH2605 |
A | HOH2606 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN A1461 |
Chain | Residue |
A | ASP315 |
A | ZN1460 |
A | HOH2606 |
A | HIS59 |
A | HIS61 |
A | KCX150 |
site_id | AC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 A1462 |
Chain | Residue |
A | LYS370 |
A | LYS373 |
A | HOH2507 |
A | HOH2508 |
A | HOH2607 |
A | HOH2608 |
A | HOH2609 |
B | HIS361 |
B | ARG362 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN B1460 |
Chain | Residue |
B | KCX150 |
B | HIS183 |
B | HIS239 |
B | ZN1461 |
B | HOH2584 |
B | HOH2585 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN B1461 |
Chain | Residue |
B | HIS59 |
B | HIS61 |
B | KCX150 |
B | ASP315 |
B | ZN1460 |
B | HOH2585 |
site_id | AC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B1462 |
Chain | Residue |
A | HIS361 |
B | LYS370 |
B | LYS373 |
B | HOH2472 |
B | HOH2473 |
B | HOH2586 |
B | HOH2587 |
B | HOH2588 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN C1460 |
Chain | Residue |
C | KCX150 |
C | HIS183 |
C | HIS239 |
C | ZN1461 |
C | HOH2654 |
C | HOH2655 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN C1461 |
Chain | Residue |
C | HIS59 |
C | HIS61 |
C | KCX150 |
C | ASP315 |
C | ZN1460 |
C | HOH2655 |
site_id | AC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 C1462 |
Chain | Residue |
C | LYS370 |
C | LYS373 |
C | HOH2548 |
C | HOH2549 |
C | HOH2656 |
C | HOH2657 |
C | HOH2658 |
D | HIS361 |
D | ARG362 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 C1463 |
Chain | Residue |
C | GLN107 |
C | LYS110 |
C | HOH2661 |
C | HOH2662 |
F | EPE1463 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN D1460 |
Chain | Residue |
D | KCX150 |
D | HIS183 |
D | HIS239 |
D | ZN1461 |
D | HOH2555 |
D | HOH2556 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN D1461 |
Chain | Residue |
D | HIS59 |
D | HIS61 |
D | KCX150 |
D | ASP315 |
D | ZN1460 |
D | HOH2556 |
site_id | BC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 D1462 |
Chain | Residue |
C | HIS361 |
D | LYS370 |
D | LYS373 |
D | HOH2456 |
D | HOH2457 |
D | HOH2557 |
D | HOH2558 |
D | HOH2559 |
D | HOH2560 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN E1460 |
Chain | Residue |
E | KCX150 |
E | HIS183 |
E | HIS239 |
E | ZN1461 |
E | HOH2680 |
E | HOH2681 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN E1461 |
Chain | Residue |
E | HOH2681 |
E | HIS59 |
E | HIS61 |
E | KCX150 |
E | ASP315 |
E | ZN1460 |
site_id | BC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 E1462 |
Chain | Residue |
E | LYS370 |
E | LYS373 |
E | HOH2555 |
E | HOH2556 |
E | HOH2682 |
E | HOH2683 |
E | HOH2685 |
E | HOH2687 |
F | HIS361 |
site_id | BC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 E1463 |
Chain | Residue |
D | EPE1463 |
E | GLN107 |
E | LYS110 |
E | HOH2688 |
E | HOH2689 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 E1464 |
Chain | Residue |
E | ARG438 |
E | HOH2690 |
E | HOH2691 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN F1460 |
Chain | Residue |
F | KCX150 |
F | HIS183 |
F | HIS239 |
F | ZN1461 |
F | HOH2591 |
F | HOH2592 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ZN F1461 |
Chain | Residue |
F | HIS59 |
F | HIS61 |
F | KCX150 |
F | ASP315 |
F | ZN1460 |
F | HOH2592 |
site_id | CC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 F1462 |
Chain | Residue |
E | HIS361 |
E | HOH2553 |
F | LYS370 |
F | LYS373 |
F | HOH2483 |
F | HOH2485 |
F | HOH2594 |
F | HOH2595 |
F | HOH2596 |
site_id | CC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EPE D1463 |
Chain | Residue |
D | VAL428 |
D | ASP439 |
D | HOH2524 |
D | HOH2562 |
D | HOH2563 |
D | HOH2564 |
E | GLN107 |
E | GLU140 |
E | SO41463 |
site_id | CC5 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE EPE F1463 |
Chain | Residue |
C | LEU103 |
C | GLN107 |
C | GLU140 |
C | SO41463 |
F | SER427 |
F | VAL428 |
F | ASP439 |
F | HOH2597 |
F | HOH2598 |
F | HOH2599 |
F | HOH2600 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1j79 |
Chain | Residue | Details |
A | ASP315 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1j79 |
Chain | Residue | Details |
B | ASP315 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1j79 |
Chain | Residue | Details |
C | ASP315 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1j79 |
Chain | Residue | Details |
D | ASP315 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1j79 |
Chain | Residue | Details |
E | ASP315 |
site_id | CSA6 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1j79 |
Chain | Residue | Details |
F | ASP315 |