Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1G1L

THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TDP-GLUCOSE COMPLEX.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
A0009058biological_processbiosynthetic process
A0009244biological_processlipopolysaccharide core region biosynthetic process
A0016779molecular_functionnucleotidyltransferase activity
A0019305biological_processdTDP-rhamnose biosynthetic process
A0045226biological_processextracellular polysaccharide biosynthetic process
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
B0009058biological_processbiosynthetic process
B0009244biological_processlipopolysaccharide core region biosynthetic process
B0016779molecular_functionnucleotidyltransferase activity
B0019305biological_processdTDP-rhamnose biosynthetic process
B0045226biological_processextracellular polysaccharide biosynthetic process
B0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
C0009058biological_processbiosynthetic process
C0009244biological_processlipopolysaccharide core region biosynthetic process
C0016779molecular_functionnucleotidyltransferase activity
C0019305biological_processdTDP-rhamnose biosynthetic process
C0045226biological_processextracellular polysaccharide biosynthetic process
C0046872molecular_functionmetal ion binding
D0000166molecular_functionnucleotide binding
D0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
D0009058biological_processbiosynthetic process
D0009244biological_processlipopolysaccharide core region biosynthetic process
D0016779molecular_functionnucleotidyltransferase activity
D0019305biological_processdTDP-rhamnose biosynthetic process
D0045226biological_processextracellular polysaccharide biosynthetic process
D0046872molecular_functionmetal ion binding
E0000166molecular_functionnucleotide binding
E0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
E0009058biological_processbiosynthetic process
E0009244biological_processlipopolysaccharide core region biosynthetic process
E0016779molecular_functionnucleotidyltransferase activity
E0019305biological_processdTDP-rhamnose biosynthetic process
E0045226biological_processextracellular polysaccharide biosynthetic process
E0046872molecular_functionmetal ion binding
F0000166molecular_functionnucleotide binding
F0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
F0009058biological_processbiosynthetic process
F0009244biological_processlipopolysaccharide core region biosynthetic process
F0016779molecular_functionnucleotidyltransferase activity
F0019305biological_processdTDP-rhamnose biosynthetic process
F0045226biological_processextracellular polysaccharide biosynthetic process
F0046872molecular_functionmetal ion binding
G0000166molecular_functionnucleotide binding
G0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
G0009058biological_processbiosynthetic process
G0009244biological_processlipopolysaccharide core region biosynthetic process
G0016779molecular_functionnucleotidyltransferase activity
G0019305biological_processdTDP-rhamnose biosynthetic process
G0045226biological_processextracellular polysaccharide biosynthetic process
G0046872molecular_functionmetal ion binding
H0000166molecular_functionnucleotide binding
H0008879molecular_functionglucose-1-phosphate thymidylyltransferase activity
H0009058biological_processbiosynthetic process
H0009244biological_processlipopolysaccharide core region biosynthetic process
H0016779molecular_functionnucleotidyltransferase activity
H0019305biological_processdTDP-rhamnose biosynthetic process
H0045226biological_processextracellular polysaccharide biosynthetic process
H0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 3700
ChainResidue
ASER12
AGLY13
ATHR14
AARG15
ALYS25
AHOH4062

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 B 3701
ChainResidue
BARG15
BLYS25
BHOH3986
BHOH4080
BHOH4153
BHOH4203
BHOH4205
BSER12
BGLY13
BTHR14

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 G 3702
ChainResidue
GSER12
GGLY13
GTHR14
GARG15
GLYS25
GHOH3946
GHOH4117
GHOH4139
GHOH4157
GHOH4204

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 H 3703
ChainResidue
HSER12
HGLY13
HTHR14
HARG15

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 3802
ChainResidue
AARG62
AHOH3985
BARG62
CHOH4051

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 3803
ChainResidue
AARG128
AGLU215
AHOH4030
AHOH4084
FASP151
FGLN152
FHOH4059

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 3804
ChainResidue
BGLU160
BGLU161
BARG194
BARG204
BHOH3899
BHOH3925
BHOH4108

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 3805
ChainResidue
BHOH4118
CARG62
CHOH3935
CHOH4021
DARG62
DHOH3955

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 3806
ChainResidue
CGLN127
CARG128
CGLN129
CTHR130

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 3807
ChainResidue
DGLN127
DARG128
DGLN129
DTHR130

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 E 3808
ChainResidue
EARG62
EHOH3885
FARG62

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 E 3809
ChainResidue
EGLN127
EARG128
EGLN129
ETHR130
EHOH3980

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 3810
ChainResidue
BARG128
BGLU215
EASP151
EGLN152
EHOH3989
EHOH3990

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 F 3811
ChainResidue
FGLN129
FTHR130

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 G 3812
ChainResidue
CASP151
CGLN152
CHOH4014
CHOH4093
GARG128
GGLU215
GHOH3951
GHOH4101

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 G 3813
ChainResidue
GGLU160
GGLU161
GARG194
GARG204
GHOH3880
GHOH3941
GHOH4134

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 H 3814
ChainResidue
GARG62
HARG62

site_idBC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 H 3815
ChainResidue
DHOH4074
HARG128
HGLU215
HHOH3892
DASP151
DGLN152
DHOH3943
DHOH3949

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 H 3816
ChainResidue
HGLU160
HGLU161
HARG204
HHOH3919
HHOH4149

site_idCC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 3817
ChainResidue
AGLU160
AGLU161
AARG194
AARG204
AHOH3908
AHOH3914
AHOH3992
AHOH4201
BHOH4183

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 3818
ChainResidue
AHIS116
ADAU3501
AHOH3829
AHOH3921
AHOH3927
AHOH3997
CLEU121
CTYR221
CHOH3905

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 3819
ChainResidue
BLEU121
BTYR221
BHOH3816
DHIS116
DDAU3507
DHOH3892
DHOH3933

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 E 3820
ChainResidue
EHIS116
EDAU3509
EHOH3831
EHOH3894
EHOH4034
HLEU121
HTYR221
HHOH3871

site_idCC6
Number of Residues25
DetailsBINDING SITE FOR RESIDUE DAU A 3500
ChainResidue
ALEU8
AGLY10
AGLY11
AGLN26
AGLN82
APRO85
AASP86
AGLY87
ALEU88
ALEU108
AGLY109
AASP110
AASN111
ATYR145
AGLY146
AGLU161
ALYS162
AVAL172
AGLU196
ATHR200
AHOH3819
AHOH3904
AHOH4168
AHOH4203
AHOH4224

site_idCC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE DAU A 3501
ChainResidue
ALEU45
ATYR114
AGLY115
AHIS116
AASP117
APHE118
AHIS119
AGLU120
AVAL250
AALA251
AGLU255
AILE256
AARG259
ATYR293
ASO43818
AHOH3839
AHOH3847
AHOH3850
AHOH3862
AHOH3900
AHOH3927
AHOH4023
AHOH4049
AHOH4184
CILE216
CGLY218
CARG219
CGLY220

site_idCC8
Number of Residues27
DetailsBINDING SITE FOR RESIDUE DAU B 3502
ChainResidue
BLEU8
BGLY10
BGLY11
BARG15
BGLN26
BGLN82
BPRO85
BASP86
BGLY87
BLEU88
BLEU108
BGLY109
BASP110
BASN111
BTYR145
BGLY146
BGLU161
BLYS162
BVAL172
BTHR200
BHOH3832
BHOH3856
BHOH3915
BHOH3969
BHOH4199
BHOH4200
BHOH4201

site_idCC9
Number of Residues25
DetailsBINDING SITE FOR RESIDUE DAU B 3503
ChainResidue
BLEU45
BTYR114
BGLY115
BHIS116
BASP117
BPHE118
BHIS119
BGLU120
BVAL250
BALA251
BGLU255
BILE256
BTYR293
BHOH3817
BHOH3826
BHOH3835
BHOH3863
BHOH3876
BHOH3887
BHOH3971
BHOH4112
DILE216
DGLY218
DARG219
DGLY220

site_idDC1
Number of Residues28
DetailsBINDING SITE FOR RESIDUE DAU C 3504
ChainResidue
CLEU8
CGLY10
CGLY11
CLYS25
CGLN26
CGLN82
CPRO85
CASP86
CGLY87
CLEU88
CLEU108
CGLY109
CASP110
CASN111
CTYR145
CGLY146
CGLU161
CLYS162
CVAL172
CTHR200
CHOH3814
CHOH3852
CHOH3977
CHOH4121
CHOH4146
CHOH4147
CHOH4149
CHOH4154

site_idDC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DAU C 3505
ChainResidue
AILE216
AGLY218
AARG219
AGLY220
CLEU45
CTYR114
CGLY115
CHIS116
CASP117
CPHE118
CHIS119
CGLU120
CVAL250
CALA251
CGLU255
CILE256
CARG259
CTYR293
CHOH3810
CHOH3826
CHOH3832
CHOH3850
CHOH3880
CHOH3979

site_idDC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE DAU D 3506
ChainResidue
DLEU8
DGLY10
DGLY11
DLYS25
DGLN26
DGLN82
DPRO85
DASP86
DGLY87
DLEU88
DLEU108
DASP110
DASN111
DTYR145
DGLY146
DGLU161
DLYS162
DVAL172
DGLU196
DTHR200
DHOH3820
DHOH3958
DHOH3988
DHOH4107
DHOH4108

site_idDC4
Number of Residues26
DetailsBINDING SITE FOR RESIDUE DAU D 3507
ChainResidue
BILE216
BGLY218
BARG219
BGLY220
DLEU45
DTYR114
DGLY115
DHIS116
DASP117
DPHE118
DHIS119
DGLU120
DVAL250
DALA251
DGLU255
DILE256
DARG259
DTYR293
DSO43819
DHOH3827
DHOH3833
DHOH3840
DHOH3857
DHOH3886
DHOH3892
DHOH3940

site_idDC5
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DAU E 3508
ChainResidue
ELEU8
EGLY10
EGLY11
ELYS25
EGLN26
EGLN82
EPRO85
EASP86
EGLY87
ELEU88
ELEU108
EASP110
EASN111
ETYR145
EGLY146
EGLU161
ELYS162
EVAL172
EGLU196
ETHR200
EHOH3825
EHOH4126
EHOH4127
EHOH4128

site_idDC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DAU E 3509
ChainResidue
ELEU45
ETYR114
EGLY115
EHIS116
EASP117
EPHE118
EHIS119
EGLU120
EVAL250
EALA251
EGLU255
EILE256
ETYR293
ESO43820
EHOH3827
EHOH3832
EHOH3833
EHOH3873
EHOH3894
EHOH3937
HILE216
HGLY218
HARG219
HGLY220

site_idDC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE DAU F 3510
ChainResidue
FLEU8
FGLY10
FGLY11
FLYS25
FGLN26
FGLN82
FPRO85
FASP86
FGLY87
FLEU88
FLEU108
FASP110
FASN111
FTYR145
FGLY146
FGLU161
FLYS162
FVAL172
FARG194
FGLU196
FTHR200
FTRP223
FHOH3828
FHOH3922
FHOH3990
FHOH4001
FHOH4118
FHOH4119

site_idDC8
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DAU F 3511
ChainResidue
FLEU45
FTYR114
FGLY115
FHIS116
FASP117
FPHE118
FHIS119
FGLU120
FVAL250
FALA251
FGLU255
FILE256
FTYR293
FHOH3818
FHOH3826
FHOH3832
FHOH3876
FHOH3878
FHOH3926
GILE216
GGLY218
GARG219
GGLY220

site_idDC9
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DAU H 3512
ChainResidue
HLEU8
HGLY10
HGLY11
HGLN26
HGLN82
HPRO85
HASP86
HGLY87
HLEU88
HLEU108
HASP110
HASN111
HTYR145
HGLY146
HGLU161
HLYS162
HVAL172
HTHR200
HHOH3825
HHOH3884
HHOH4002
HHOH4068
HHOH4139
HHOH4193

site_idEC1
Number of Residues27
DetailsBINDING SITE FOR RESIDUE DAU H 3513
ChainResidue
EILE216
EGLY218
EARG219
EGLY220
HLEU45
HTYR114
HGLY115
HHIS116
HASP117
HPHE118
HHIS119
HGLU120
HVAL250
HALA251
HGLU255
HILE256
HARG259
HTYR293
HHOH3832
HHOH3835
HHOH3851
HHOH3905
HHOH3908
HHOH3914
HHOH3949
HHOH3952
HHOH4076

site_idEC2
Number of Residues28
DetailsBINDING SITE FOR RESIDUE DAU G 3514
ChainResidue
GLEU8
GGLY10
GGLY11
GGLN26
GGLN82
GPRO85
GASP86
GGLY87
GLEU88
GLEU108
GGLY109
GASP110
GASN111
GTYR145
GGLY146
GGLU161
GLYS162
GVAL172
GTHR200
GHOH3827
GHOH3895
GHOH3902
GHOH3965
GHOH3990
GHOH4052
GHOH4117
GHOH4126
GHOH4157

site_idEC3
Number of Residues26
DetailsBINDING SITE FOR RESIDUE DAU G 3515
ChainResidue
FILE216
FGLY218
FARG219
FGLY220
GLEU45
GTYR114
GGLY115
GHIS116
GASP117
GPHE118
GHIS119
GGLU120
GVAL250
GALA251
GGLU255
GILE256
GARG259
GTYR293
GHOH3823
GHOH3829
GHOH3856
GHOH3879
GHOH3891
GHOH3907
GHOH3997
GHOH4142

site_idEC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE CIT A 3800
ChainResidue
ATYR31
ALYS249
AGLY279
AHOH3955
AHOH4205
AHOH4206
AHOH4221
BARG15
BHIS229

site_idEC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CIT A 3801
ChainResidue
AHIS229
AHOH3905
AHOH3912
AHOH4063
AHOH4214
AHOH4215
AHOH4216
AHOH4217
BTYR31
BASP32
BLYS249
BGLY279

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
AARG15

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
BARG15

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
CARG15

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
DARG15

site_idCSA5
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
EARG15

site_idCSA6
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
FARG15

site_idCSA7
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
GARG15

site_idCSA8
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
HARG15

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon