1FXO
THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). TMP COMPLEX.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000271 | biological_process | polysaccharide biosynthetic process |
| A | 0005829 | cellular_component | cytosol |
| A | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| A | 0009058 | biological_process | biosynthetic process |
| A | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0000271 | biological_process | polysaccharide biosynthetic process |
| B | 0005829 | cellular_component | cytosol |
| B | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| B | 0009058 | biological_process | biosynthetic process |
| B | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0000271 | biological_process | polysaccharide biosynthetic process |
| C | 0005829 | cellular_component | cytosol |
| C | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| C | 0009058 | biological_process | biosynthetic process |
| C | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0000271 | biological_process | polysaccharide biosynthetic process |
| D | 0005829 | cellular_component | cytosol |
| D | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| D | 0009058 | biological_process | biosynthetic process |
| D | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016779 | molecular_function | nucleotidyltransferase activity |
| D | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000166 | molecular_function | nucleotide binding |
| E | 0000271 | biological_process | polysaccharide biosynthetic process |
| E | 0005829 | cellular_component | cytosol |
| E | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| E | 0009058 | biological_process | biosynthetic process |
| E | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| E | 0016740 | molecular_function | transferase activity |
| E | 0016779 | molecular_function | nucleotidyltransferase activity |
| E | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000166 | molecular_function | nucleotide binding |
| F | 0000271 | biological_process | polysaccharide biosynthetic process |
| F | 0005829 | cellular_component | cytosol |
| F | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| F | 0009058 | biological_process | biosynthetic process |
| F | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| F | 0016740 | molecular_function | transferase activity |
| F | 0016779 | molecular_function | nucleotidyltransferase activity |
| F | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0000166 | molecular_function | nucleotide binding |
| G | 0000271 | biological_process | polysaccharide biosynthetic process |
| G | 0005829 | cellular_component | cytosol |
| G | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| G | 0009058 | biological_process | biosynthetic process |
| G | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| G | 0016740 | molecular_function | transferase activity |
| G | 0016779 | molecular_function | nucleotidyltransferase activity |
| G | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0000166 | molecular_function | nucleotide binding |
| H | 0000271 | biological_process | polysaccharide biosynthetic process |
| H | 0005829 | cellular_component | cytosol |
| H | 0008879 | molecular_function | glucose-1-phosphate thymidylyltransferase activity |
| H | 0009058 | biological_process | biosynthetic process |
| H | 0009244 | biological_process | lipopolysaccharide core region biosynthetic process |
| H | 0016740 | molecular_function | transferase activity |
| H | 0016779 | molecular_function | nucleotidyltransferase activity |
| H | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 A 3700 |
| Chain | Residue |
| A | ARG128 |
| A | GLU215 |
| A | HOH9591 |
| A | HOH9892 |
| F | ASP151 |
| F | GLN152 |
| F | HOH9678 |
| F | HOH9874 |
| site_id | AC2 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 E 4700 |
| Chain | Residue |
| B | GLU215 |
| B | HOH9568 |
| E | ASP151 |
| E | GLN152 |
| E | HOH9617 |
| E | HOH9790 |
| E | HOH9874 |
| B | ARG128 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 3800 |
| Chain | Residue |
| C | GLN127 |
| C | ARG128 |
| C | GLN129 |
| C | THR130 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 D 3900 |
| Chain | Residue |
| B | HOH9956 |
| C | ARG62 |
| D | ARG62 |
| D | HOH9632 |
| D | HOH9713 |
| D | HOH9757 |
| D | HOH9818 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 C 4000 |
| Chain | Residue |
| C | ASP151 |
| C | GLN152 |
| C | HOH9673 |
| C | HOH9814 |
| C | HOH9886 |
| G | ARG128 |
| G | GLU215 |
| G | HOH9679 |
| G | HOH9733 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 D 4800 |
| Chain | Residue |
| D | GLN127 |
| D | ARG128 |
| D | GLN129 |
| D | THR130 |
| D | HOH9859 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 D 5000 |
| Chain | Residue |
| B | ARG245 |
| D | ARG144 |
| D | SER231 |
| D | HOH9564 |
| D | HOH9720 |
| D | HOH9728 |
| D | HOH9887 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 D 5100 |
| Chain | Residue |
| D | ASP151 |
| D | GLN152 |
| D | HOH9651 |
| H | ARG128 |
| H | GLU215 |
| H | HOH9633 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 D 5200 |
| Chain | Residue |
| D | ARG49 |
| D | HOH9634 |
| D | HOH9693 |
| E | ARG187 |
| E | HOH9666 |
| site_id | BC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 5700 |
| Chain | Residue |
| E | ARG62 |
| E | GLN65 |
| E | HOH9813 |
| F | ARG62 |
| site_id | BC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 E 5800 |
| Chain | Residue |
| E | GLN127 |
| E | ARG128 |
| E | GLN129 |
| E | THR130 |
| E | HOH9850 |
| site_id | BC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 F 6700 |
| Chain | Residue |
| F | GLN129 |
| F | THR130 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 G 7700 |
| Chain | Residue |
| G | ARG62 |
| G | HOH9672 |
| G | HOH9770 |
| G | HOH9833 |
| G | HOH9857 |
| H | ARG62 |
| site_id | BC5 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE TMP A 8500 |
| Chain | Residue |
| A | LEU8 |
| A | GLY10 |
| A | GLY11 |
| A | LYS25 |
| A | GLN26 |
| A | GLN82 |
| A | PRO85 |
| A | ASP86 |
| A | GLY87 |
| A | LEU88 |
| A | GLY109 |
| A | ASP110 |
| A | ARG194 |
| A | GLU196 |
| A | HOH9651 |
| A | HOH9663 |
| A | HOH9852 |
| site_id | BC6 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE TMP B 9500 |
| Chain | Residue |
| B | PRO85 |
| B | ASP86 |
| B | GLY87 |
| B | LEU88 |
| B | GLY109 |
| B | ASP110 |
| B | LYS162 |
| B | GLU196 |
| B | HOH9642 |
| B | HOH9667 |
| B | HOH9669 |
| B | HOH9702 |
| B | HOH9868 |
| B | LEU8 |
| B | GLY10 |
| B | GLY11 |
| B | LYS25 |
| B | GLN26 |
| B | GLN82 |
| site_id | BC7 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE TMP C 9501 |
| Chain | Residue |
| C | LEU8 |
| C | GLY10 |
| C | GLY11 |
| C | LYS25 |
| C | GLN26 |
| C | GLN82 |
| C | PRO85 |
| C | ASP86 |
| C | GLY87 |
| C | LEU88 |
| C | GLY109 |
| C | ASP110 |
| C | GLU196 |
| C | HOH9622 |
| C | HOH9760 |
| site_id | BC8 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE TMP D 9502 |
| Chain | Residue |
| D | LEU8 |
| D | GLY10 |
| D | GLY11 |
| D | LYS25 |
| D | GLN26 |
| D | GLN82 |
| D | PRO85 |
| D | ASP86 |
| D | GLY87 |
| D | LEU88 |
| D | GLY109 |
| D | ASP110 |
| D | GLU196 |
| D | HOH9644 |
| D | HOH9672 |
| D | HOH9698 |
| D | HOH9744 |
| D | HOH9781 |
| site_id | BC9 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE TMP E 9503 |
| Chain | Residue |
| E | LEU8 |
| E | GLY10 |
| E | GLY11 |
| E | LYS25 |
| E | GLN26 |
| E | GLN82 |
| E | PRO85 |
| E | ASP86 |
| E | GLY87 |
| E | LEU88 |
| E | ASP110 |
| E | HOH9747 |
| E | HOH9752 |
| E | HOH9886 |
| site_id | CC1 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE TMP F 9504 |
| Chain | Residue |
| F | LEU8 |
| F | GLY10 |
| F | LYS25 |
| F | GLN26 |
| F | GLN82 |
| F | PRO85 |
| F | ASP86 |
| F | GLY87 |
| F | LEU88 |
| F | ASP110 |
| F | GLU196 |
| F | HOH9623 |
| F | HOH9646 |
| F | HOH9649 |
| F | HOH9748 |
| site_id | CC2 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE TMP G 9505 |
| Chain | Residue |
| G | LEU8 |
| G | GLY10 |
| G | GLY11 |
| G | LYS25 |
| G | GLN26 |
| G | GLN82 |
| G | PRO85 |
| G | ASP86 |
| G | GLY87 |
| G | LEU88 |
| G | GLY109 |
| G | ASP110 |
| G | GLU196 |
| G | HOH9601 |
| G | HOH9795 |
| G | HOH9807 |
| G | HOH9850 |
| G | HOH9882 |
| site_id | CC3 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE TMP H 9506 |
| Chain | Residue |
| H | LEU8 |
| H | GLY10 |
| H | GLY11 |
| H | LYS25 |
| H | GLN26 |
| H | GLN82 |
| H | PRO85 |
| H | ASP86 |
| H | GLY87 |
| H | LEU88 |
| H | GLY109 |
| H | ASP110 |
| H | HOH9614 |
| H | HOH9673 |
| H | HOH9692 |
| H | HOH9768 |
| H | HOH9830 |
| H | HOH9861 |
| H | HOH9867 |
| H | HOH9882 |
| H | HOH9939 |
| site_id | CC4 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE TMP A 9507 |
| Chain | Residue |
| A | LEU45 |
| A | TYR114 |
| A | GLY115 |
| A | HIS116 |
| A | ASP117 |
| A | VAL250 |
| A | ALA251 |
| A | GLU255 |
| A | ILE256 |
| A | ARG259 |
| A | HOH9520 |
| A | HOH9527 |
| A | HOH9530 |
| A | HOH9534 |
| A | HOH9535 |
| A | HOH9547 |
| A | HOH9947 |
| C | GLY218 |
| C | ARG219 |
| C | GLY220 |
| site_id | CC5 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE TMP B 9508 |
| Chain | Residue |
| B | LEU45 |
| B | TYR114 |
| B | GLY115 |
| B | HIS116 |
| B | ASP117 |
| B | VAL250 |
| B | ALA251 |
| B | GLU255 |
| B | ILE256 |
| B | HOH9517 |
| B | HOH9521 |
| B | HOH9529 |
| B | HOH9536 |
| B | HOH9560 |
| B | HOH9693 |
| B | HOH9969 |
| B | HOH9970 |
| D | GLY218 |
| D | ARG219 |
| D | GLY220 |
| site_id | CC6 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE TMP C 9509 |
| Chain | Residue |
| A | GLY218 |
| A | ARG219 |
| A | GLY220 |
| C | LEU45 |
| C | TYR114 |
| C | GLY115 |
| C | HIS116 |
| C | ASP117 |
| C | VAL250 |
| C | ALA251 |
| C | GLU255 |
| C | ILE256 |
| C | ARG259 |
| C | HOH9522 |
| C | HOH9547 |
| C | HOH9548 |
| C | HOH9575 |
| C | HOH9630 |
| C | HOH9884 |
| C | HOH9891 |
| site_id | CC7 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE TMP D 9510 |
| Chain | Residue |
| B | GLY218 |
| B | ARG219 |
| B | GLY220 |
| D | LEU45 |
| D | TYR114 |
| D | GLY115 |
| D | HIS116 |
| D | ASP117 |
| D | VAL250 |
| D | ALA251 |
| D | GLU255 |
| D | ILE256 |
| D | ARG259 |
| D | HOH9526 |
| D | HOH9529 |
| D | HOH9537 |
| D | HOH9546 |
| D | HOH9548 |
| D | HOH9571 |
| D | HOH9874 |
| site_id | CC8 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE TMP E 9511 |
| Chain | Residue |
| E | TYR114 |
| E | GLY115 |
| E | HIS116 |
| E | ASP117 |
| E | VAL250 |
| E | ALA251 |
| E | GLU255 |
| E | ILE256 |
| E | HOH9517 |
| E | HOH9524 |
| E | HOH9539 |
| E | HOH9554 |
| E | HOH9556 |
| E | HOH9591 |
| E | HOH9598 |
| H | GLY218 |
| H | ARG219 |
| H | GLY220 |
| site_id | CC9 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE TMP F 9512 |
| Chain | Residue |
| F | LEU45 |
| F | TYR114 |
| F | GLY115 |
| F | HIS116 |
| F | ASP117 |
| F | VAL250 |
| F | ALA251 |
| F | GLU255 |
| F | ILE256 |
| F | HOH9514 |
| F | HOH9530 |
| F | HOH9531 |
| F | HOH9545 |
| F | HOH9568 |
| F | HOH9576 |
| F | HOH9602 |
| G | GLY218 |
| G | ARG219 |
| G | GLY220 |
| site_id | DC1 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE TMP G 9513 |
| Chain | Residue |
| F | GLY218 |
| F | ARG219 |
| F | GLY220 |
| G | TYR114 |
| G | GLY115 |
| G | HIS116 |
| G | ASP117 |
| G | VAL250 |
| G | ALA251 |
| G | GLU255 |
| G | ILE256 |
| G | HOH9518 |
| G | HOH9527 |
| G | HOH9538 |
| G | HOH9542 |
| G | HOH9546 |
| G | HOH9588 |
| G | HOH9600 |
| site_id | DC2 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE TMP H 9514 |
| Chain | Residue |
| E | GLY218 |
| E | ARG219 |
| E | GLY220 |
| H | LEU45 |
| H | TYR114 |
| H | GLY115 |
| H | HIS116 |
| H | ASP117 |
| H | VAL250 |
| H | ALA251 |
| H | GLU255 |
| H | ILE256 |
| H | HOH9523 |
| H | HOH9524 |
| H | HOH9527 |
| H | HOH9533 |
| H | HOH9537 |
| H | HOH9541 |
| H | HOH9552 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| A | ARG15 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| B | ARG15 |
| site_id | CSA3 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| C | ARG15 |
| site_id | CSA4 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| D | ARG15 |
| site_id | CSA5 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| E | ARG15 |
| site_id | CSA6 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| F | ARG15 |
| site_id | CSA7 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| G | ARG15 |
| site_id | CSA8 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1hv9 |
| Chain | Residue | Details |
| H | ARG15 |
