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1FSI

CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE OF APPR>P FROM ARABIDOPSIS THALIANA

Functional Information from GO Data
ChainGOidnamespacecontents
A0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
A0016787molecular_functionhydrolase activity
B0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
B0016787molecular_functionhydrolase activity
C0004112molecular_functioncyclic-nucleotide phosphodiesterase activity
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
C0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 190
ChainResidue
AHIS42
ATHR44
AHIS119
ASER121
ATYR124
AHOH610
AHOH616
AHOH658
AHOH668

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 191
ChainResidue
AARG76
ASER78
ATHR79
AGLN136

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 201
ChainResidue
BHIS42
BTHR44
BHIS119
BSER121
BTYR124
BHOH211
BHOH222
BHOH258
BHOH265

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 202
ChainResidue
BARG76
BSER78
BTHR79
BGLN136

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 203
ChainResidue
ALYS5
ALYS160
AGLU172
BLYS5
BLYS160
BGLU172
BHOH274

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 C 401
ChainResidue
CHIS42
CTHR44
CHIS119
CSER121
CTYR124
CHOH416
CHOH421
CHOH427
CHOH444
CHOH470

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 402
ChainResidue
CARG76
CSER78
CTHR79
CGLN136

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 403
ChainResidue
CLYS5
CASP7
CLYS160
CLYS160
CGLU172
CGLU172

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 601
ChainResidue
AARG31
AARG38
BARG31
CARG31
CARG38

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton donor/acceptor
ChainResidueDetails
AHIS42
AHIS119
BHIS42
BHIS119
CHIS42
CHIS119

site_idSWS_FT_FI2
Number of Residues9
DetailsBINDING:
ChainResidueDetails
ATHR44
ASER121
ATYR124
BTHR44
BSER121
BTYR124
CTHR44
CSER121
CTYR124

Catalytic Information from CSA
site_idCSA1
Number of Residues5
DetailsAnnotated By Reference To The Literature 1jh6
ChainResidueDetails
AHIS42
ASER121
AMET117
AHIS119
ATYR124

site_idCSA2
Number of Residues5
DetailsAnnotated By Reference To The Literature 1jh6
ChainResidueDetails
BHIS42
BSER121
BMET117
BHIS119
BTYR124

site_idCSA3
Number of Residues5
DetailsAnnotated By Reference To The Literature 1jh6
ChainResidueDetails
CHIS42
CSER121
CMET117
CHIS119
CTYR124

site_idMCSA1
Number of Residues6
DetailsM-CSA 794
ChainResidueDetails
AHIS42proton donor
ATHR44electrostatic stabiliser
AMET117electrostatic stabiliser, increase basicity
AHIS119increase nucleophilicity, proton acceptor
ASER121electrostatic stabiliser
ATYR124electrostatic stabiliser

site_idMCSA2
Number of Residues6
DetailsM-CSA 794
ChainResidueDetails
BHIS42proton donor
BTHR44electrostatic stabiliser
BMET117electrostatic stabiliser, increase basicity
BHIS119increase nucleophilicity, proton acceptor
BSER121electrostatic stabiliser
BTYR124electrostatic stabiliser

site_idMCSA3
Number of Residues6
DetailsM-CSA 794
ChainResidueDetails
CHIS42proton donor
CTHR44electrostatic stabiliser
CMET117electrostatic stabiliser, increase basicity
CHIS119increase nucleophilicity, proton acceptor
CSER121electrostatic stabiliser
CTYR124electrostatic stabiliser

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PDB entries from 2024-07-31

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