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1F8Y

CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE

Functional Information from GO Data
ChainGOidnamespacecontents
A0009117biological_processnucleotide metabolic process
A0016740molecular_functiontransferase activity
A0043173biological_processnucleotide salvage
A0050144molecular_functionnucleoside deoxyribosyltransferase activity
B0009117biological_processnucleotide metabolic process
B0016740molecular_functiontransferase activity
B0043173biological_processnucleotide salvage
B0050144molecular_functionnucleoside deoxyribosyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 5MD A 158
ChainResidue
ATYR7
AGLU98
BASN323
BTYR357
AGLY9
AALA10
ATRP12
APHE13
AGLN46
AASP72
AASP92
AGLY94

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE 5MD B 2
ChainResidue
AASN123
AMET125
ATYR157
BTYR207
BGLY209
BTRP212
BPRO242
BGLN246
BASP272
BASP292
BGLU298

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000269|PubMed:7797550
ChainResidueDetails
AGLU98
BGLU298

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1f8x
ChainResidueDetails
AGLU98
AASP92
ATYR7
AASP72

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1f8x
ChainResidueDetails
BTYR207
BASP272
BASP292
BGLU298

site_idMCSA1
Number of Residues4
DetailsM-CSA 554
ChainResidueDetails
ATYR7electrostatic stabiliser
AASP72electrostatic stabiliser
AASP92proton donor, proton shuttle (general acid/base)
AGLU98covalently attached, electrostatic stabiliser

site_idMCSA2
Number of Residues4
DetailsM-CSA 554
ChainResidueDetails
BTYR207electrostatic stabiliser
BASP272electrostatic stabiliser
BASP292proton donor, proton shuttle (general acid/base)
BGLU298covalently attached, electrostatic stabiliser

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PDB entries from 2025-07-02

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