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1F89

Crystal structure of Saccharomyces cerevisiae Nit3, a member of branch 10 of the nitrilase superfamily

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0006107biological_processoxaloacetate metabolic process
A0006528biological_processasparagine metabolic process
A0006541biological_processglutamine metabolic process
A0016787molecular_functionhydrolase activity
A0016811molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
A0043605biological_processamide catabolic process
A0050152molecular_functionomega-amidase activity
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006107biological_processoxaloacetate metabolic process
B0006528biological_processasparagine metabolic process
B0006541biological_processglutamine metabolic process
B0016787molecular_functionhydrolase activity
B0016811molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
B0043605biological_processamide catabolic process
B0050152molecular_functionomega-amidase activity
Functional Information from PROSITE/UniProt
site_idPS01227
Number of Residues21
DetailsUPF0012 Uncharacterized protein family UPF0012 signature. GvgICYDMrFPelamlsarkG
ChainResidueDetails
AGLY165-GLY185

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00054","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00054","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU00054","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues6
DetailsAnnotated By Reference To The Literature 1fo6
ChainResidueDetails
AASN111
AGLU53
ACYS169
AGLU144
AASN196
ALYS128

site_idCSA2
Number of Residues6
DetailsAnnotated By Reference To The Literature 1fo6
ChainResidueDetails
BLYS428
BGLU353
BCYS469
BASN411
BGLU444
BASN496

243083

PDB entries from 2025-10-15

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