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1EQ2

THE CRYSTAL STRUCTURE OF ADP-L-GLYCERO-D-MANNOHEPTOSE 6-EPIMERASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0005975biological_processcarbohydrate metabolic process
A0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
A0009103biological_processlipopolysaccharide biosynthetic process
A0009244biological_processlipopolysaccharide core region biosynthetic process
A0016020cellular_componentmembrane
A0016853molecular_functionisomerase activity
A0050661molecular_functionNADP binding
A0070401molecular_functionNADP+ binding
A0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0005975biological_processcarbohydrate metabolic process
B0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
B0009103biological_processlipopolysaccharide biosynthetic process
B0009244biological_processlipopolysaccharide core region biosynthetic process
B0016020cellular_componentmembrane
B0016853molecular_functionisomerase activity
B0050661molecular_functionNADP binding
B0070401molecular_functionNADP+ binding
B0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
C0005515molecular_functionprotein binding
C0005829cellular_componentcytosol
C0005975biological_processcarbohydrate metabolic process
C0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
C0009103biological_processlipopolysaccharide biosynthetic process
C0009244biological_processlipopolysaccharide core region biosynthetic process
C0016020cellular_componentmembrane
C0016853molecular_functionisomerase activity
C0050661molecular_functionNADP binding
C0070401molecular_functionNADP+ binding
C0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
D0005515molecular_functionprotein binding
D0005829cellular_componentcytosol
D0005975biological_processcarbohydrate metabolic process
D0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
D0009103biological_processlipopolysaccharide biosynthetic process
D0009244biological_processlipopolysaccharide core region biosynthetic process
D0016020cellular_componentmembrane
D0016853molecular_functionisomerase activity
D0050661molecular_functionNADP binding
D0070401molecular_functionNADP+ binding
D0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
E0005515molecular_functionprotein binding
E0005829cellular_componentcytosol
E0005975biological_processcarbohydrate metabolic process
E0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
E0009103biological_processlipopolysaccharide biosynthetic process
E0009244biological_processlipopolysaccharide core region biosynthetic process
E0016020cellular_componentmembrane
E0016853molecular_functionisomerase activity
E0050661molecular_functionNADP binding
E0070401molecular_functionNADP+ binding
E0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
F0005515molecular_functionprotein binding
F0005829cellular_componentcytosol
F0005975biological_processcarbohydrate metabolic process
F0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
F0009103biological_processlipopolysaccharide biosynthetic process
F0009244biological_processlipopolysaccharide core region biosynthetic process
F0016020cellular_componentmembrane
F0016853molecular_functionisomerase activity
F0050661molecular_functionNADP binding
F0070401molecular_functionNADP+ binding
F0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
G0005515molecular_functionprotein binding
G0005829cellular_componentcytosol
G0005975biological_processcarbohydrate metabolic process
G0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
G0009103biological_processlipopolysaccharide biosynthetic process
G0009244biological_processlipopolysaccharide core region biosynthetic process
G0016020cellular_componentmembrane
G0016853molecular_functionisomerase activity
G0050661molecular_functionNADP binding
G0070401molecular_functionNADP+ binding
G0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
H0005515molecular_functionprotein binding
H0005829cellular_componentcytosol
H0005975biological_processcarbohydrate metabolic process
H0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
H0009103biological_processlipopolysaccharide biosynthetic process
H0009244biological_processlipopolysaccharide core region biosynthetic process
H0016020cellular_componentmembrane
H0016853molecular_functionisomerase activity
H0050661molecular_functionNADP binding
H0070401molecular_functionNADP+ binding
H0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
I0005515molecular_functionprotein binding
I0005829cellular_componentcytosol
I0005975biological_processcarbohydrate metabolic process
I0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
I0009103biological_processlipopolysaccharide biosynthetic process
I0009244biological_processlipopolysaccharide core region biosynthetic process
I0016020cellular_componentmembrane
I0016853molecular_functionisomerase activity
I0050661molecular_functionNADP binding
I0070401molecular_functionNADP+ binding
I0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
J0005515molecular_functionprotein binding
J0005829cellular_componentcytosol
J0005975biological_processcarbohydrate metabolic process
J0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
J0009103biological_processlipopolysaccharide biosynthetic process
J0009244biological_processlipopolysaccharide core region biosynthetic process
J0016020cellular_componentmembrane
J0016853molecular_functionisomerase activity
J0050661molecular_functionNADP binding
J0070401molecular_functionNADP+ binding
J0097171biological_processADP-L-glycero-beta-D-manno-heptose biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAP A 2400
ChainResidue
AGLY6
AGLY76
AALA77
ASER79
AASN92
ATYR96
AALA114
ASER115
ASER116
ATYR140
ALYS144
AGLY9
ATYR167
APHE168
AVAL170
AHIS177
ALYS178
AHOH848
AHOH1285
APHE10
AILE11
AASP31
AASN32
ALYS38
ALYS53
AGLU75

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ADQ A 2500
ChainResidue
ATHR81
AASN169
ASER180
AALA182
AHIS187
AARG209
APHE243

site_idAC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAP B 2401
ChainResidue
BGLY6
BGLY9
BPHE10
BILE11
BASP31
BASN32
BLYS38
BLYS53
BGLU75
BGLY76
BALA77
BSER79
BASN92
BTYR96
BALA114
BSER115
BSER116
BTYR140
BLYS144
BTYR167
BPHE168
BVAL170
BHIS177
BLYS178
BHOH648
BHOH679
BADQ2501

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ADQ B 2501
ChainResidue
BPHE168
BASN169
BSER180
BALA182
BHIS187
BLEU200
BPHE201
BSER204
BARG209
BPHE243
BTYR272
BGLN273
BTHR276
BHOH841
BHOH981
BNAP2401

site_idAC5
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAP C 2402
ChainResidue
CLYS178
CHOH607
CGLY6
CGLY9
CPHE10
CILE11
CASP31
CASN32
CLYS38
CLYS53
CGLU75
CGLY76
CALA77
CSER79
CASN92
CTYR96
CALA114
CSER115
CSER116
CTYR140
CLYS144
CTYR167
CPHE168
CVAL170
CHIS177

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ADQ C 2502
ChainResidue
CTHR81
CASN169
CSER180
CMET181
CALA182
CVAL184
CHIS187
CARG209
CPHE243
CTYR272

site_idAC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE NAP D 2403
ChainResidue
DGLY6
DGLY9
DPHE10
DILE11
DASP31
DASN32
DLYS38
DLYS53
DGLU75
DGLY76
DALA77
DSER79
DASN92
DTYR96
DALA114
DSER115
DSER116
DTYR140
DLYS144
DTYR167
DPHE168
DVAL170
DHIS177
DLYS178
DHOH601
DHOH674
DHOH720
DADQ2503

site_idAC8
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADQ D 2503
ChainResidue
DSER79
DTHR81
DSER116
DTYR140
DASN169
DLYS178
DSER180
DMET181
DALA182
DVAL184
DHIS187
DPHE201
DSER204
DARG209
DPHE243
DTYR272
DHOH820
DHOH829
DHOH960
DHOH1087
DNAP2403

site_idAC9
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAP E 2404
ChainResidue
EGLY6
EGLY9
EPHE10
EILE11
EASP31
EASN32
ELYS38
ELYS53
EGLU75
EGLY76
EALA77
ESER79
EASN92
ETYR96
EALA114
ESER115
ESER116
ETYR140
ELYS144
ETYR167
EPHE168
EVAL170
EHIS177
ELYS178
EHOH639
EHOH671

site_idBC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ADQ E 2504
ChainResidue
EASN169
ESER180
EALA182
EVAL184
EHIS187
ELEU200
EPHE201
ESER204
EARG209
EPHE243
ETYR272
EGLN273
EHOH1624

site_idBC2
Number of Residues28
DetailsBINDING SITE FOR RESIDUE NAP F 2405
ChainResidue
FGLY6
FGLY9
FPHE10
FILE11
FASP31
FASN32
FLYS38
FLYS53
FGLU75
FGLY76
FALA77
FSER79
FASN92
FTYR96
FALA114
FSER115
FSER116
FTYR140
FLYS144
FTYR167
FPHE168
FVAL170
FHIS177
FLYS178
FHOH661
FHOH782
FHOH809
FADQ2505

site_idBC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADQ F 2505
ChainResidue
FALA117
FTYR167
FPHE168
FASN169
FSER180
FALA182
FHIS187
FLEU200
FPHE201
FSER204
FARG209
FPHE243
FLEU268
FTYR272
FGLN273
FTHR276
FHOH702
FHOH965
FHOH1071
FHOH1262
FNAP2405

site_idBC4
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAP G 2406
ChainResidue
GGLY6
GGLY9
GPHE10
GILE11
GASP31
GASN32
GLYS38
GLYS53
GGLU75
GGLY76
GALA77
GSER79
GASN92
GTYR96
GALA114
GSER115
GSER116
GTYR140
GLYS144
GTYR167
GPHE168
GVAL170
GHIS177
GLYS178
GHOH620
GHOH819

site_idBC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ADQ G 2506
ChainResidue
GTHR81
GASN169
GSER180
GMET181
GALA182
GVAL184
GHIS187
GPHE201
GSER204
GARG209
GPHE243
GTYR272
GHOH799
GHOH1338
GHOH1546

site_idBC6
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAP H 2407
ChainResidue
HGLY6
HGLY9
HPHE10
HILE11
HASP31
HASN32
HLYS38
HLYS53
HGLU75
HGLY76
HALA77
HSER79
HTYR88
HASN92
HTYR96
HALA114
HSER115
HSER116
HTYR140
HLYS144
HTYR167
HPHE168
HVAL170
HHIS177
HLYS178
HHOH615

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ADQ H 2507
ChainResidue
HASN169
HSER180
HVAL184
HHIS187
HLEU200
HPHE201
HSER204
HARG209
HPHE243
HTYR272
HHOH1218
HHOH1650

site_idBC8
Number of Residues28
DetailsBINDING SITE FOR RESIDUE NAP I 2408
ChainResidue
IGLY6
IGLY9
IPHE10
IILE11
IASP31
IASN32
ILYS38
ILYS53
IGLU75
IGLY76
IALA77
ISER79
IASN92
ITYR96
IALA114
ISER115
ISER116
ITYR140
ILYS144
ITYR167
IPHE168
IVAL170
IHIS177
ILYS178
IHOH624
IHOH633
IHOH928
IHOH947

site_idBC9
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADQ I 2508
ChainResidue
ITHR81
IASN169
ISER180
IMET181
IALA182
IVAL184
IHIS187
IPHE201
ISER204
IARG209
IPHE243
ILEU268
ITYR272
IHOH742
IHOH1164
IHOH1401
IHOH1561

site_idCC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAP J 2409
ChainResidue
JGLY6
JGLY9
JPHE10
JILE11
JASP31
JASN32
JLYS38
JLYS53
JGLU75
JGLY76
JALA77
JSER79
JASN92
JTYR96
JALA114
JSER115
JSER116
JTYR140
JLYS144
JTYR167
JPHE168
JVAL170
JHIS177
JLYS178
JHOH602

site_idCC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ADQ J 2509
ChainResidue
JASN169
JSER180
JALA182
JVAL184
JHIS187
JLEU200
JPHE201
JSER204
JARG209
JPHE243
JTYR272
JHOH1602

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:17316025
ChainResidueDetails
ATYR140
ELYS178
FTYR140
FLYS178
GTYR140
GLYS178
HTYR140
HLYS178
ITYR140
ILYS178
JTYR140
ALYS178
JLYS178
BTYR140
BLYS178
CTYR140
CLYS178
DTYR140
DLYS178
ETYR140

site_idSWS_FT_FI2
Number of Residues150
DetailsBINDING: BINDING => ECO:0000269|PubMed:10896473
ChainResidueDetails
APHE10
ALYS178
GLYS178
GSER180
GHIS187
GPHE201
GARG209
GTYR272
HPHE10
HASP31
HLYS38
HLYS53
ASER180
HGLU75
HASN92
HLYS144
HASN169
HVAL170
HLYS178
HSER180
HHIS187
HPHE201
HARG209
AHIS187
HTYR272
IPHE10
IASP31
ILYS38
ILYS53
IGLU75
IASN92
ILYS144
IASN169
IVAL170
APHE201
ILYS178
ISER180
IHIS187
IPHE201
IARG209
ITYR272
JPHE10
JASP31
JLYS38
JLYS53
AARG209
JGLU75
JASN92
JLYS144
JASN169
JVAL170
JLYS178
JSER180
JHIS187
JPHE201
JARG209
ATYR272
JTYR272
BPHE10
BASP31
BLYS38
BLYS53
AASP31
BGLU75
BASN92
BLYS144
BASN169
BVAL170
BLYS178
BSER180
BHIS187
BPHE201
BARG209
ALYS38
BTYR272
CPHE10
CASP31
CLYS38
CLYS53
CGLU75
CASN92
CLYS144
CASN169
CVAL170
ALYS53
CLYS178
CSER180
CHIS187
CPHE201
CARG209
CTYR272
DPHE10
DASP31
DLYS38
DLYS53
AGLU75
DGLU75
DASN92
DLYS144
DASN169
DVAL170
DLYS178
DSER180
DHIS187
DPHE201
DARG209
AASN92
DTYR272
EPHE10
EASP31
ELYS38
ELYS53
EGLU75
EASN92
ELYS144
EASN169
EVAL170
ALYS144
ELYS178
ESER180
EHIS187
EPHE201
EARG209
ETYR272
FPHE10
FASP31
FLYS38
FLYS53
AASN169
FGLU75
FASN92
FLYS144
FASN169
FVAL170
FLYS178
FSER180
FHIS187
FPHE201
FARG209
AVAL170
FTYR272
GPHE10
GASP31
GLYS38
GLYS53
GGLU75
GASN92
GLYS144
GASN169
GVAL170

site_idSWS_FT_FI3
Number of Residues10
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842
ChainResidueDetails
ALYS267
JLYS267
BLYS267
CLYS267
DLYS267
ELYS267
FLYS267
GLYS267
HLYS267
ILYS267

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
ASER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
ATYR140proton acceptor, proton donor
ALYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA2
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
BSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
BTYR140proton acceptor, proton donor
BLYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA3
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
CSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
CTYR140proton acceptor, proton donor
CLYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA4
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
DSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
DTYR140proton acceptor, proton donor
DLYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA5
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
ESER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
ETYR140proton acceptor, proton donor
ELYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA6
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
FSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
FTYR140proton acceptor, proton donor
FLYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA7
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
GSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
GTYR140proton acceptor, proton donor
GLYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA8
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
HSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
HTYR140proton acceptor, proton donor
HLYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA9
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
ISER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
ITYR140proton acceptor, proton donor
ILYS178electrostatic stabiliser, proton acceptor, proton donor

site_idMCSA10
Number of Residues3
DetailsM-CSA 557
ChainResidueDetails
JSER116electrostatic stabiliser, proton acceptor, proton donor, proton relay
JTYR140proton acceptor, proton donor
JLYS178electrostatic stabiliser, proton acceptor, proton donor

218853

PDB entries from 2024-04-24

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