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1E7L

Endonuclease VII (EndoVII) N62D mutant from phage T4

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0046872molecular_functionmetal ion binding
B0004519molecular_functionendonuclease activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE SO4 A1158
ChainResidue
AHIS41
AHOH2181
AHOH2182
AHOH2183
AHOH2185
AASP42
AHIS43
AARG54
AGLU65
ALYS69
AHOH2074
AHOH2179
AHOH2180

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A1159
ChainResidue
AGLY120
ALYS121
ALYS141
AHOH2186
BARG118

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A1160
ChainResidue
AHIS41
AHIS43
AHOH2100
AHOH2187
AHOH2188
AHOH2190
AHOH2191
BASN107

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A1161
ChainResidue
AHIS70
AASN73
AARG74
AGLU122

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A1162
ChainResidue
ALYS121
ATHR140
ALYS141
AHOH2167

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A1163
ChainResidue
AGLU44
ALEU45
AASN46
AHOH2192

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A1164
ChainResidue
AHIS70
ALYS71
AARG74

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A1165
ChainResidue
ACYS23
ACYS26
ACYS58
ACYS61

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B1158
ChainResidue
BTYR8
BLYS12
BHIS38
BLEU39
BHOH2224
BHOH2225
BHOH2233

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1159
ChainResidue
BVAL109
BLYS149
BARG153
BHOH2155
BHOH2227

site_idBC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE SO4 B1160
ChainResidue
BHIS41
BASP42
BHIS43
BARG54
BGLU65
BLYS69
BHOH2070
BHOH2228
BHOH2229
BHOH2230
BHOH2231
BHOH2232

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1161
ChainResidue
AASN107
BHIS38
BHIS41
BHIS43
BHOH2233

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1162
ChainResidue
AARG118
BGLY120
BLYS121
BLYS141
BHOH2234

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B1163
ChainResidue
BLYS121
BTHR140
BLYS141
BHOH2235

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1164
ChainResidue
BHIS70
BASN73
BARG74
BGLU122
BHOH2175

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B1165
ChainResidue
BCYS23
BCYS26
BCYS58
BCYS61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING:
ChainResidueDetails
ACYS23
BCYS58
BCYS61
BASP62
ACYS26
AASP40
ACYS58
ACYS61
AASP62
BCYS23
BCYS26
BASP40

Catalytic Information from CSA
site_idCSA1
Number of Residues4
Detailsa catalytic site defined by CSA, PubMed 11327769
ChainResidueDetails
AHIS43
AGLU65
AHIS41
BHIS105

site_idCSA2
Number of Residues3
Detailsa catalytic site defined by CSA, PubMed 11327769
ChainResidueDetails
BHIS43
BGLU65
BHIS41

site_idCSA3
Number of Residues4
Detailsa catalytic site defined by CSA, PubMed 11327769
ChainResidueDetails
AHIS43
AGLU65
AHIS41
BHIS105

site_idCSA4
Number of Residues2
Detailsa catalytic site defined by CSA, PubMed 11327769
ChainResidueDetails
AHIS105
BHIS41

site_idMCSA1
Number of Residues6
DetailsM-CSA 161
ChainResidueDetails
AASP40metal ligand
AHIS41hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AHIS43electrostatic stabiliser, hydrogen bond donor
AASP62metal ligand
AGLU65electrostatic stabiliser, hydrogen bond donor
AHIS105hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues6
DetailsM-CSA 161
ChainResidueDetails
BASP40metal ligand
BHIS41hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BHIS43electrostatic stabiliser, hydrogen bond donor
BASP62metal ligand
BGLU65electrostatic stabiliser, hydrogen bond donor
BHIS105hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

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PDB entries from 2024-08-21

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