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1E7K

Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0000398biological_processmRNA splicing, via spliceosome
A0000492biological_processbox C/D snoRNP assembly
A0001651cellular_componentdense fibrillar component
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005681cellular_componentspliceosomal complex
A0005690cellular_componentU4atac snRNP
A0005730cellular_componentnucleolus
A0006397biological_processmRNA processing
A0007338biological_processsingle fertilization
A0008380biological_processRNA splicing
A0030490biological_processmaturation of SSU-rRNA
A0030515molecular_functionsnoRNA binding
A0030621molecular_functionU4 snRNA binding
A0030622molecular_functionU4atac snRNA binding
A0031428cellular_componentbox C/D methylation guide snoRNP complex
A0032040cellular_componentsmall-subunit processome
A0032991cellular_componentprotein-containing complex
A0034511molecular_functionU3 snoRNA binding
A0034512molecular_functionbox C/D sno(s)RNA binding
A0042254biological_processribosome biogenesis
A0042274biological_processribosomal small subunit biogenesis
A0046540cellular_componentU4/U6 x U5 tri-snRNP complex
A0051117molecular_functionATPase binding
A0071005cellular_componentU2-type precatalytic spliceosome
A0071011cellular_componentprecatalytic spliceosome
A1990904cellular_componentribonucleoprotein complex
B0000398biological_processmRNA splicing, via spliceosome
B0000492biological_processbox C/D snoRNP assembly
B0001651cellular_componentdense fibrillar component
B0003723molecular_functionRNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005681cellular_componentspliceosomal complex
B0005690cellular_componentU4atac snRNP
B0005730cellular_componentnucleolus
B0006397biological_processmRNA processing
B0007338biological_processsingle fertilization
B0008380biological_processRNA splicing
B0030490biological_processmaturation of SSU-rRNA
B0030515molecular_functionsnoRNA binding
B0030621molecular_functionU4 snRNA binding
B0030622molecular_functionU4atac snRNA binding
B0031428cellular_componentbox C/D methylation guide snoRNP complex
B0032040cellular_componentsmall-subunit processome
B0032991cellular_componentprotein-containing complex
B0034511molecular_functionU3 snoRNA binding
B0034512molecular_functionbox C/D sno(s)RNA binding
B0042254biological_processribosome biogenesis
B0042274biological_processribosomal small subunit biogenesis
B0046540cellular_componentU4/U6 x U5 tri-snRNP complex
B0051117molecular_functionATPase binding
B0071005cellular_componentU2-type precatalytic spliceosome
B0071011cellular_componentprecatalytic spliceosome
B1990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CedknVPYvfVrSKqaLG
ChainResidueDetails
ACYS73-GLY90

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsSITE: Interaction with U4 snRNA and U4atac snRNA => ECO:0000269|PubMed:17412961, ECO:0000269|PubMed:21784869
ChainResidueDetails
AGLU61
ALYS86
BGLU61
BLYS86

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:19413330
ChainResidueDetails
AMET1
BMET1

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N-acetylthreonine; in NHP2-like protein 1, N-terminally processed => ECO:0000269|Ref.7, ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:25944712
ChainResidueDetails
ATHR2
BTHR2

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9D0T1
ChainResidueDetails
ALYS21
BLYS21

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER122
BSER122

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PDB entries from 2024-07-24

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