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1E1T

LYSYL-TRNA SYNTHETASE (LYSU) HEXAGONAL FORM COMPLEXED WITH THE LYSYL_ADENYLATE INTERMEDIATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004824molecular_functionlysine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006430biological_processlysyl-tRNA aminoacylation
A0016020cellular_componentmembrane
A0016874molecular_functionligase activity
A0034605biological_processcellular response to heat
A0036260biological_processRNA capping
A0042803molecular_functionprotein homodimerization activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 515
ChainResidue
AGLU414
AGLU421
ALAD601
APOP602

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 516
ChainResidue
AHIS270
AHOH732
APOP602

site_idAC3
Number of Residues29
DetailsBINDING SITE FOR RESIDUE LAD B 510
ChainResidue
AALA238
AGLU240
AARG262
AGLU264
AARG269
AHIS270
AASN271
APHE274
AMET276
AGLU278
ATYR280
AGLU421
AILE422
AASN424
APHE426
AGLU428
AGLY473
AGLY475
AGLY477
AARG480
AILE491
AHOH705
AHOH732
AHOH854
APOP602
AMG603
AHOH761
AGLY216
AALA217

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE POP B 512
ChainResidue
AARG262
AHIS270
AGLU421
AARG480
AHOH732
AHOH805
ALAD601
AMG603
AMG604

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 520
ChainResidue
ATYR312
AHIS315
AILE384
AGLY418
AARG420
AHIS489

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 521
ChainResidue
ALEU190
AARG194
AARG194
AGLU204
AGLU206
AILE257
AASN258
AASN258
AHOH822
AHOH703

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 522
ChainResidue
ATYR286
ATHR390
AGLU391
AASN403
ATHR410
AASP411
AARG412

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 523
ChainResidue
ASER218
AVAL396
ASER397
APRO398
ALEU399
AASN424
APHE426
AHOH705
AHOH761

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 524
ChainResidue
AILE384
AGLN385
AHOH916

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GOL B 525
ChainResidue
APRO214
AGLY215
AALA217
ASER218
AALA219
APRO221
AILE237
ALYS446
AGLU452
AALA453
AMET454
APHE455

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 526
ChainResidue
AGLY32
AVAL33
ALYS333
AASN403
AASP404
AHOH811
AHOH729

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AGLU414
AGLU421

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842
ChainResidueDetails
ALYS113
ALYS155

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1asy
ChainResidueDetails
AARG480
AGLU278
AARG262

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1asy
ChainResidueDetails
AARG262

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PDB entries from 2024-07-17

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