Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1DY7

Cytochrome cd1 Nitrite Reductase, CO complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0009055molecular_functionelectron transfer activity
A0016491molecular_functionoxidoreductase activity
A0020037molecular_functionheme binding
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
A0050418molecular_functionhydroxylamine reductase activity
A0050421molecular_functionnitrite reductase (NO-forming) activity
B0009055molecular_functionelectron transfer activity
B0016491molecular_functionoxidoreductase activity
B0020037molecular_functionheme binding
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
B0050418molecular_functionhydroxylamine reductase activity
B0050421molecular_functionnitrite reductase (NO-forming) activity
Functional Information from PDB Data
site_idAC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE DHE A 602
ChainResidue
AARG174
AALA302
AILE303
AHIS345
AARG391
APHE444
AGLN507
ATRP522
AGLY555
APHE557
ACMO603
AHIS200
AHOH2083
AHOH2110
AHOH2389
AHOH2401
AHOH2402
AHOH2403
AHOH2404
AILE201
AARG203
AARG216
AARG243
ASER244
ATYR263
AALA301

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CMO A 603
ChainResidue
AHIS388
APHE444
ADHE602
AHOH2252

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 611
ChainResidue
APHE395
AVAL396
APRO449
ASER451
AILE475
AHOH2304
AHOH2405

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 621
ChainResidue
ATYR308
AARG354
ALYS372

site_idAC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC B 601
ChainResidue
BARG64
BCYS65
BCYS68
BHIS69
BTHR77
BGLY78
BLYS79
BLEU89
BTYR93
BLEU94
BPHE97
BILE98
BSER102
BALA104
BGLY105
BMET106
BTRP109
BHOH2433

site_idAC6
Number of Residues28
DetailsBINDING SITE FOR RESIDUE DHE B 602
ChainResidue
BARG174
BHIS200
BILE201
BARG203
BARG216
BARG243
BSER244
BILE245
BTYR263
BALA301
BALA302
BILE303
BHIS345
BARG391
BPHE444
BGLN507
BTRP522
BGLY555
BPHE557
BCMO603
BHOH2121
BHOH2434
BHOH2435
BHOH2436
BHOH2437
BHOH2438
BHOH2439
BHOH2440

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CMO B 603
ChainResidue
BHIS388
BDHE602
BHOH2287

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 611
ChainResidue
BLYS488
BTHR489
BLEU490
BPRO491
BTRP495
BLEU539
BHOH2441

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 612
ChainResidue
BHOH2097
BARG174
BTYR197
BARG216

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 621
ChainResidue
BTYR308
BARG354
BLYS372
BHOH2315
BHOH2442

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 622
ChainResidue
BGLY439
BGLY440
BASN461
BGLU463
BHOH2336

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: axial binding residue => ECO:0000269|PubMed:7736589, ECO:0007744|PDB:1QKS
ChainResidueDetails
BHIS17
BTYR25
BHIS69
BHIS200
AHIS17
ATYR25
AHIS69
AHIS200

site_idSWS_FT_FI2
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:7736589, ECO:0007744|PDB:1QKS
ChainResidueDetails
AARG174
AARG203
AARG216
AARG243
ATYR263
AARG391
AGLN507
ATHR554
BSER28
BLYS79
BTYR93
BTRP109
BARG174
BARG203
BARG216
BARG243
BTYR263
BARG391
BGLN507
BTHR554
ASER28
ALYS79
ATYR93
ATRP109

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: covalent => ECO:0000269|PubMed:7736589, ECO:0007744|PDB:1QKS
ChainResidueDetails
ACYS65
ACYS68
BCYS65
BCYS68

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon