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1DKP

CRYSTAL STRUCTURE OF PHYTATE COMPLEX OF ESCHERICHIA COLI PHYTASE AT PH 6.6. PHYTATE IS BOUND WITH ITS 3-PHOSPHATE IN THE ACTIVE SITE. HG2+ CATION ACTS AS AN INTERMOLECULAR BRIDGE

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0008252molecular_functionnucleotidase activity
A0016036biological_processcellular response to phosphate starvation
A0016787molecular_functionhydrolase activity
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042597cellular_componentperiplasmic space
A0050308molecular_functionsugar-phosphatase activity
A0052745molecular_functioninositol phosphate phosphatase activity
A0071454biological_processcellular response to anoxia
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE HG A 500
ChainResidue
AHIS113
AASP154
AHIS158
ATYR289
AHOH613
AHOH820

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE HG A 501
ChainResidue
ALEU293
AHOH865
AHOH866
AHIS282
AGLN285
AGLN287

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE HG A 502
ChainResidue
AARG16
AGLU219
AHIS250
AASP304
AASP325
ATHR327
AHG503
AIHP550

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE HG A 503
ChainResidue
AHIS250
AASP304
AASP325
ATHR327
AHG502

site_idAC5
Number of Residues20
DetailsBINDING SITE FOR RESIDUE IHP A 550
ChainResidue
AARG16
AARG20
ATHR23
ALYS24
AASP90
AARG92
AMET216
AHIS250
APHE254
AARG267
AHIS303
AASP304
ATHR305
AHG502
AHOH635
AHOH644
AHOH655
AHOH727
AHOH752
AHOH821

Functional Information from PROSITE/UniProt
site_idPS00778
Number of Residues17
DetailsHIS_ACID_PHOSPHAT_2 Histidine acid phosphatases active site signature. VlFIaGHDTNLanLggA
ChainResidueDetails
AVAL297-ALA313

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"10655611","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"1429631","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"10655611","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"8407904","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10655611","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000305","citation":{"citationType":"submission","publicationDate":"JUN-2014","submissionDatabase":"PDB data bank","title":"The Complex Structure of mutant Phytase with IHS.","authors":["Wu T.H.","Chen C.C.","Huang C.H.","Guo R.T."]}},{"source":"PDB","id":"1DKP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1DKQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10655611","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1DKP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1DKQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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