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1DJE

CRYSTAL STRUCTURE OF THE PLP-BOUND FORM OF 8-AMINO-7-OXONANOATE SYNTHASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0008710molecular_function8-amino-7-oxononanoate synthase activity
A0009058biological_processbiosynthetic process
A0009102biological_processbiotin biosynthetic process
A0016740molecular_functiontransferase activity
A0030170molecular_functionpyridoxal phosphate binding
A0042803molecular_functionprotein homodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
AARG23
AARG101
ALEU256

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
ALEU147
AARG148
AARG149
AHOH1168
AHOH1218
AHOH1430

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 403
ChainResidue
AARG130
AALA151
AHIS152
AHOH1093

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE PLP A 400
ChainResidue
ASER107
AGLY108
APHE109
AHIS133
AGLU175
ASER179
AASP204
AALA206
AHIS207
ATHR233
ALYS236
ASER265
ATHR266
AHOH1030
AHOH1117
AHOH1290
AHOH1340

Functional Information from PROSITE/UniProt
site_idPS00599
Number of Residues10
DetailsAA_TRANSFER_CLASS_2 Aminotransferases class-II pyridoxal-phosphate attachment site. TFGKGFGVSG
ChainResidueDetails
ATHR233-GLY242

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10642176","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10642176","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16557306","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"N6-(pyridoxal phosphate)lysine","evidences":[{"source":"PubMed","id":"10642176","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16557306","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs0
ChainResidueDetails
AASP204
AGLU175
ALYS236
AHIS133

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bs0
ChainResidueDetails
AHIS207
APHE238

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bs0
ChainResidueDetails
AHIS207
ALYS236

site_idMCSA1
Number of Residues7
DetailsM-CSA 430
ChainResidueDetails
AASN47electrostatic stabiliser
AHIS133electrostatic stabiliser, proton shuttle (general acid/base)
AGLU175electrostatic stabiliser
ASER179modifies pKa
AASP204electrostatic stabiliser
AHIS207electrostatic stabiliser, proton shuttle (general acid/base)
ALYS236covalent catalysis, proton shuttle (general acid/base)

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PDB entries from 2025-07-23

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