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1DGS

CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE FROM T. FILIFORMIS

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003911molecular_functionDNA ligase (NAD+) activity
A0006260biological_processDNA replication
A0006281biological_processDNA repair
B0003677molecular_functionDNA binding
B0003911molecular_functionDNA ligase (NAD+) activity
B0006260biological_processDNA replication
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 701
ChainResidue
ACYS406
ACYS409
ACYS422
ACYS427

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 2701
ChainResidue
BCYS2406
BCYS2409
BCYS2422
BCYS2427

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE AMP A 700
ChainResidue
AGLU114
AHIS115
ALYS116
AVAL117
AGLU169
AARG196
ATYR221
AHIS253
ALYS312
ALEU85

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE AMP B 2700
ChainResidue
BHOH1100
BLEU2085
BGLU2114
BHIS2115
BLYS2116
BVAL2117
BLEU2120
BGLU2169
BARG2196
BTYR2221
BLYS2312

Functional Information from PROSITE/UniProt
site_idPS01056
Number of Residues16
DetailsDNA_LIGASE_N2 NAD-dependent DNA ligase signature 2. VGRTGrVTpVgvLePV
ChainResidueDetails
AVAL329-VAL344

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|HAMAP-Rule:MF_01588, ECO:0000269|PubMed:10698952, ECO:0000269|PubMed:15268945
ChainResidueDetails
AASP118
BASP2118

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01588
ChainResidueDetails
AASP34
BILE2174
BGLY2226
BLYS2288
ASER84
AVAL139
AILE174
AGLY226
ALYS288
BASP2034
BSER2084
BVAL2139

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:10698952
ChainResidueDetails
ALYS116
BLYS2116

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01588, ECO:0000305|PubMed:10698952
ChainResidueDetails
ALYS312
BLYS2312

site_idSWS_FT_FI5
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01588, ECO:0000269|PubMed:10698952
ChainResidueDetails
ACYS406
ACYS409
ACYS422
ACYS427
BCYS2406
BCYS2409
BCYS2422
BCYS2427

Catalytic Information from CSA
site_idMCSA1
Number of Residues9
DetailsM-CSA 450
ChainResidueDetails
ALYS116electrostatic stabiliser
AASP118covalent catalysis
ALEU120electrostatic stabiliser
AGLY226electrostatic stabiliser
ALYS312electrostatic stabiliser
ACYS406metal ligand
ACYS409metal ligand
ACYS422metal ligand
ACYS427metal ligand

site_idMCSA2
Number of Residues9
DetailsM-CSA 450
ChainResidueDetails
BLYS2116electrostatic stabiliser
BASP2118covalent catalysis
BLEU2120electrostatic stabiliser
BGLY2226electrostatic stabiliser
BLYS2312electrostatic stabiliser
BCYS2406metal ligand
BCYS2409metal ligand
BCYS2422metal ligand
BCYS2427metal ligand

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PDB entries from 2024-07-24

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