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1DEK

DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0016301molecular_functionkinase activity
A0047507molecular_function(deoxy)nucleoside-phosphate kinase activity
B0005524molecular_functionATP binding
B0016301molecular_functionkinase activity
B0047507molecular_function(deoxy)nucleoside-phosphate kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 300
ChainResidue
ATYR42
AGLN85
ACYS88
AGLU108

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 300
ChainResidue
BTYR42
BGLN85
BCYS88
BGLU108

site_idAC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE DGP A 301
ChainResidue
AALA33
ALYS37
AARG68
AARG132
AMET135
AGLY139
ATHR140
AVAL144
ATRP152
AASP175
AARG177
AGLN178
AGLU181
ATHR208
AHOH304
AHOH305
AHOH325
AHOH346
AHOH364
AHOH424
ALYS10

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DGP B 301
ChainResidue
BLEU32
BALA33
BLYS37
BARG68
BARG132
BMET135
BTHR140
BTRP152
BASP175
BGLN178
BGLU181
BHOH317
BHOH342

Catalytic Information from CSA
site_idCSA1
Number of Residues2
Detailsa catalytic site defined by CSA, PubMed 8670851
ChainResidueDetails
AARG68
AHIS206

site_idCSA2
Number of Residues1
Detailsa catalytic site defined by CSA, PubMed 8670851
ChainResidueDetails
BARG68

site_idMCSA1
Number of Residues3
DetailsM-CSA 637
ChainResidueDetails
AASP15
AARG68electrostatic stabiliser
AHIS206electrostatic stabiliser, metal ligand

site_idMCSA2
Number of Residues3
DetailsM-CSA 637
ChainResidueDetails
BASP15
BARG68electrostatic stabiliser
BHIS206electrostatic stabiliser, metal ligand

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PDB entries from 2024-07-03

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