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1DAO

COVALENT ADDUCT OF D-AMINO ACID OXIDASE FROM PIG KIDNEY WITH 3-METHYL-2-OXO-VALERIC ACID

Functional Information from GO Data
ChainGOidnamespacecontents
A0003884molecular_functionD-amino-acid oxidase activity
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0005777cellular_componentperoxisome
A0005782cellular_componentperoxisomal matrix
A0005829cellular_componentcytosol
A0006562biological_processproline catabolic process
A0007586biological_processdigestion
A0016491molecular_functionoxidoreductase activity
A0019478biological_processD-amino acid catabolic process
A0036088biological_processD-serine catabolic process
A0042416biological_processdopamine biosynthetic process
A0042995cellular_componentcell projection
A0045202cellular_componentsynapse
A0046416biological_processD-amino acid metabolic process
A0048786cellular_componentpresynaptic active zone
A0055130biological_processD-alanine catabolic process
A0070945biological_processneutrophil-mediated killing of gram-negative bacterium
A0071949molecular_functionFAD binding
B0003884molecular_functionD-amino-acid oxidase activity
B0005576cellular_componentextracellular region
B0005737cellular_componentcytoplasm
B0005777cellular_componentperoxisome
B0005782cellular_componentperoxisomal matrix
B0005829cellular_componentcytosol
B0006562biological_processproline catabolic process
B0007586biological_processdigestion
B0016491molecular_functionoxidoreductase activity
B0019478biological_processD-amino acid catabolic process
B0036088biological_processD-serine catabolic process
B0042416biological_processdopamine biosynthetic process
B0042995cellular_componentcell projection
B0045202cellular_componentsynapse
B0046416biological_processD-amino acid metabolic process
B0048786cellular_componentpresynaptic active zone
B0055130biological_processD-alanine catabolic process
B0070945biological_processneutrophil-mediated killing of gram-negative bacterium
B0071949molecular_functionFAD binding
C0003884molecular_functionD-amino-acid oxidase activity
C0005576cellular_componentextracellular region
C0005737cellular_componentcytoplasm
C0005777cellular_componentperoxisome
C0005782cellular_componentperoxisomal matrix
C0005829cellular_componentcytosol
C0006562biological_processproline catabolic process
C0007586biological_processdigestion
C0016491molecular_functionoxidoreductase activity
C0019478biological_processD-amino acid catabolic process
C0036088biological_processD-serine catabolic process
C0042416biological_processdopamine biosynthetic process
C0042995cellular_componentcell projection
C0045202cellular_componentsynapse
C0046416biological_processD-amino acid metabolic process
C0048786cellular_componentpresynaptic active zone
C0055130biological_processD-alanine catabolic process
C0070945biological_processneutrophil-mediated killing of gram-negative bacterium
C0071949molecular_functionFAD binding
D0003884molecular_functionD-amino-acid oxidase activity
D0005576cellular_componentextracellular region
D0005737cellular_componentcytoplasm
D0005777cellular_componentperoxisome
D0005782cellular_componentperoxisomal matrix
D0005829cellular_componentcytosol
D0006562biological_processproline catabolic process
D0007586biological_processdigestion
D0016491molecular_functionoxidoreductase activity
D0019478biological_processD-amino acid catabolic process
D0036088biological_processD-serine catabolic process
D0042416biological_processdopamine biosynthetic process
D0042995cellular_componentcell projection
D0045202cellular_componentsynapse
D0046416biological_processD-amino acid metabolic process
D0048786cellular_componentpresynaptic active zone
D0055130biological_processD-alanine catabolic process
D0070945biological_processneutrophil-mediated killing of gram-negative bacterium
D0071949molecular_functionFAD binding
E0003884molecular_functionD-amino-acid oxidase activity
E0005576cellular_componentextracellular region
E0005737cellular_componentcytoplasm
E0005777cellular_componentperoxisome
E0005782cellular_componentperoxisomal matrix
E0005829cellular_componentcytosol
E0006562biological_processproline catabolic process
E0007586biological_processdigestion
E0016491molecular_functionoxidoreductase activity
E0019478biological_processD-amino acid catabolic process
E0036088biological_processD-serine catabolic process
E0042416biological_processdopamine biosynthetic process
E0042995cellular_componentcell projection
E0045202cellular_componentsynapse
E0046416biological_processD-amino acid metabolic process
E0048786cellular_componentpresynaptic active zone
E0055130biological_processD-alanine catabolic process
E0070945biological_processneutrophil-mediated killing of gram-negative bacterium
E0071949molecular_functionFAD binding
F0003884molecular_functionD-amino-acid oxidase activity
F0005576cellular_componentextracellular region
F0005737cellular_componentcytoplasm
F0005777cellular_componentperoxisome
F0005782cellular_componentperoxisomal matrix
F0005829cellular_componentcytosol
F0006562biological_processproline catabolic process
F0007586biological_processdigestion
F0016491molecular_functionoxidoreductase activity
F0019478biological_processD-amino acid catabolic process
F0036088biological_processD-serine catabolic process
F0042416biological_processdopamine biosynthetic process
F0042995cellular_componentcell projection
F0045202cellular_componentsynapse
F0046416biological_processD-amino acid metabolic process
F0048786cellular_componentpresynaptic active zone
F0055130biological_processD-alanine catabolic process
F0070945biological_processneutrophil-mediated killing of gram-negative bacterium
F0071949molecular_functionFAD binding
G0003884molecular_functionD-amino-acid oxidase activity
G0005576cellular_componentextracellular region
G0005737cellular_componentcytoplasm
G0005777cellular_componentperoxisome
G0005782cellular_componentperoxisomal matrix
G0005829cellular_componentcytosol
G0006562biological_processproline catabolic process
G0007586biological_processdigestion
G0016491molecular_functionoxidoreductase activity
G0019478biological_processD-amino acid catabolic process
G0036088biological_processD-serine catabolic process
G0042416biological_processdopamine biosynthetic process
G0042995cellular_componentcell projection
G0045202cellular_componentsynapse
G0046416biological_processD-amino acid metabolic process
G0048786cellular_componentpresynaptic active zone
G0055130biological_processD-alanine catabolic process
G0070945biological_processneutrophil-mediated killing of gram-negative bacterium
G0071949molecular_functionFAD binding
H0003884molecular_functionD-amino-acid oxidase activity
H0005576cellular_componentextracellular region
H0005737cellular_componentcytoplasm
H0005777cellular_componentperoxisome
H0005782cellular_componentperoxisomal matrix
H0005829cellular_componentcytosol
H0006562biological_processproline catabolic process
H0007586biological_processdigestion
H0016491molecular_functionoxidoreductase activity
H0019478biological_processD-amino acid catabolic process
H0036088biological_processD-serine catabolic process
H0042416biological_processdopamine biosynthetic process
H0042995cellular_componentcell projection
H0045202cellular_componentsynapse
H0046416biological_processD-amino acid metabolic process
H0048786cellular_componentpresynaptic active zone
H0055130biological_processD-alanine catabolic process
H0070945biological_processneutrophil-mediated killing of gram-negative bacterium
H0071949molecular_functionFAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAB A 348
ChainResidue
AALA8
AGLY9
AVAL10
AILE11
AALA36
AASP37
AARG38
ATHR43
ATHR44
ATHR45
AALA48
AALA49
AGLY50
ALEU51
AARG162
ALYS163
AVAL164
ACYS181
ATHR182
ATRP185
ATYR224
ATYR228
AARG283
AHIS311
AGLY312
AGLY313
ATYR314
AGLY315
ALEU316
ATHR317
AGLY7

site_idAC2
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAB B 348
ChainResidue
BGLY7
BALA8
BGLY9
BVAL10
BILE11
BALA36
BASP37
BARG38
BTHR43
BTHR44
BTHR45
BALA48
BALA49
BGLY50
BLEU51
BARG162
BLYS163
BVAL164
BCYS181
BTHR182
BTRP185
BTYR224
BTYR228
BARG283
BHIS311
BGLY312
BGLY313
BTYR314
BGLY315
BLEU316
BTHR317

site_idAC3
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAB C 348
ChainResidue
CLEU316
CTHR317
CGLY7
CALA8
CGLY9
CVAL10
CILE11
CALA36
CASP37
CARG38
CTHR43
CTHR44
CTHR45
CALA48
CALA49
CGLY50
CLEU51
CARG162
CLYS163
CVAL164
CCYS181
CTHR182
CTRP185
CTYR224
CTYR228
CARG283
CHIS311
CGLY312
CGLY313
CTYR314
CGLY315

site_idAC4
Number of Residues30
DetailsBINDING SITE FOR RESIDUE FAB D 348
ChainResidue
DGLY7
DALA8
DGLY9
DVAL10
DILE11
DALA36
DASP37
DARG38
DTHR43
DTHR44
DTHR45
DALA48
DALA49
DGLY50
DLEU51
DARG162
DVAL164
DCYS181
DTHR182
DTRP185
DTYR224
DTYR228
DARG283
DHIS311
DGLY312
DGLY313
DTYR314
DGLY315
DLEU316
DTHR317

site_idAC5
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAB E 348
ChainResidue
EGLY7
EALA8
EGLY9
EVAL10
EILE11
EALA36
EASP37
EARG38
ETHR43
ETHR44
ETHR45
EALA48
EALA49
EGLY50
ELEU51
EARG162
ELYS163
EVAL164
ECYS181
ETHR182
ETRP185
ETYR224
ETYR228
EARG283
EHIS311
EGLY312
EGLY313
ETYR314
EGLY315
ELEU316
ETHR317

site_idAC6
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAB F 348
ChainResidue
FGLY7
FALA8
FGLY9
FVAL10
FILE11
FALA36
FASP37
FARG38
FTHR43
FTHR44
FTHR45
FALA48
FALA49
FGLY50
FLEU51
FARG162
FLYS163
FVAL164
FCYS181
FTHR182
FTRP185
FTYR224
FTYR228
FARG283
FHIS311
FGLY312
FGLY313
FTYR314
FGLY315
FLEU316
FTHR317

site_idAC7
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAB G 348
ChainResidue
GGLY7
GALA8
GGLY9
GVAL10
GILE11
GALA36
GASP37
GARG38
GTHR43
GTHR44
GTHR45
GALA48
GALA49
GGLY50
GLEU51
GARG162
GLYS163
GVAL164
GCYS181
GTHR182
GTRP185
GTYR224
GTYR228
GARG283
GHIS311
GGLY312
GGLY313
GTYR314
GGLY315
GLEU316
GTHR317

site_idAC8
Number of Residues30
DetailsBINDING SITE FOR RESIDUE FAB H 348
ChainResidue
HGLY7
HALA8
HGLY9
HVAL10
HILE11
HALA36
HASP37
HARG38
HTHR43
HTHR44
HTHR45
HALA48
HALA49
HGLY50
HLEU51
HARG162
HVAL164
HCYS181
HTHR182
HTRP185
HTYR224
HTYR228
HARG283
HHIS311
HGLY312
HGLY313
HTYR314
HGLY315
HLEU316
HTHR317

site_idFAA
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
AFAB348

site_idFAB
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
BFAB348

site_idFAC
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
CFAB348

site_idFAD
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
DFAB348

site_idFAE
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
EFAB348

site_idFAF
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
FFAB348

site_idFAG
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
GFAB348

site_idFAH
Number of Residues1
DetailsCOVALENTLY BOUND COFACTOR.
ChainResidue
HFAB348

Functional Information from PROSITE/UniProt
site_idPS00677
Number of Residues19
DetailsDAO D-amino acid oxidases signature. VIHNYGhGGyGltihwGcA
ChainResidueDetails
AVAL305-ALA323

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues64
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:30333894, ECO:0000269|PubMed:8755502, ECO:0000269|PubMed:9153426, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1DDO, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:1VE9, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH, ECO:0007744|PDB:5WWV, ECO:0007744|PDB:5WX2
ChainResidueDetails
AALA8
BASP37
BTHR45
BLEU51
BVAL164
BGLY312
BGLY315
BTHR317
CALA8
CASP37
CTHR45
AASP37
CLEU51
CVAL164
CGLY312
CGLY315
CTHR317
DALA8
DASP37
DTHR45
DLEU51
DVAL164
ATHR45
DGLY312
DGLY315
DTHR317
EALA8
EASP37
ETHR45
ELEU51
EVAL164
EGLY312
EGLY315
ALEU51
ETHR317
FALA8
FASP37
FTHR45
FLEU51
FVAL164
FGLY312
FGLY315
FTHR317
GALA8
AVAL164
GASP37
GTHR45
GLEU51
GVAL164
GGLY312
GGLY315
GTHR317
HALA8
HASP37
HTHR45
AGLY312
HLEU51
HVAL164
HGLY312
HGLY315
HTHR317
AGLY315
ATHR317
BALA8

site_idSWS_FT_FI2
Number of Residues40
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P14920
ChainResidueDetails
AGLY9
BARG283
CGLY9
CTHR43
CGLN53
CTHR182
CARG283
DGLY9
DTHR43
DGLN53
DTHR182
ATHR43
DARG283
EGLY9
ETHR43
EGLN53
ETHR182
EARG283
FGLY9
FTHR43
FGLN53
FTHR182
AGLN53
FARG283
GGLY9
GTHR43
GGLN53
GTHR182
GARG283
HGLY9
HTHR43
HGLN53
HTHR182
ATHR182
HARG283
AARG283
BGLY9
BTHR43
BGLN53
BTHR182

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:27648606, ECO:0007744|PDB:4YJH
ChainResidueDetails
AVAL10
BVAL10
CVAL10
DVAL10
EVAL10
FVAL10
GVAL10
HVAL10

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:30333894, ECO:0000269|PubMed:8755502, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH, ECO:0007744|PDB:5WX2
ChainResidueDetails
AILE11
BILE11
CILE11
DILE11
EILE11
FILE11
GILE11
HILE11

site_idSWS_FT_FI5
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:30333894, ECO:0000269|PubMed:9153426, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1DDO, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:1VE9, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH, ECO:0007744|PDB:5WWV, ECO:0007744|PDB:5WX2
ChainResidueDetails
AARG38
BARG38
CARG38
DARG38
EARG38
FARG38
GARG38
HARG38

site_idSWS_FT_FI6
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:30333894, ECO:0000269|PubMed:8755502, ECO:0000269|PubMed:9153426, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1DDO, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:1VE9, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:5WWV
ChainResidueDetails
ATHR44
BTHR44
CTHR44
DTHR44
ETHR44
FTHR44
GTHR44
HTHR44

site_idSWS_FT_FI7
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:8755502, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:1VE9, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH
ChainResidueDetails
AALA49
BALA49
CALA49
DALA49
EALA49
FALA49
GALA49
HALA49

site_idSWS_FT_FI8
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:30333894, ECO:0000269|PubMed:8755502, ECO:0000269|PubMed:9153426, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1DDO, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:1VE9, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH, ECO:0007744|PDB:5WWV
ChainResidueDetails
AGLY50
BGLY50
CGLY50
DGLY50
EGLY50
FGLY50
GGLY50
HGLY50

site_idSWS_FT_FI9
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0007744|PDB:1EVI
ChainResidueDetails
ALYS163
BLYS163
CLYS163
DLYS163
ELYS163
FLYS163
GLYS163
HLYS163

site_idSWS_FT_FI10
Number of Residues16
DetailsBINDING: BINDING => ECO:0000305|PubMed:9399588, ECO:0007744|PDB:1AN9
ChainResidueDetails
ATYR224
ETYR228
FTYR224
FTYR228
GTYR224
GTYR228
HTYR224
HTYR228
ATYR228
BTYR224
BTYR228
CTYR224
CTYR228
DTYR224
DTYR228
ETYR224

site_idSWS_FT_FI11
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:9153426, ECO:0007744|PDB:1DDO, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH
ChainResidueDetails
AGLY313
BGLY313
CGLY313
DGLY313
EGLY313
FGLY313
GGLY313
HGLY313

site_idSWS_FT_FI12
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:10876160, ECO:0000269|PubMed:24644036, ECO:0000269|PubMed:27648606, ECO:0000269|PubMed:30333894, ECO:0000269|PubMed:8755502, ECO:0000269|PubMed:9153426, ECO:0000269|PubMed:9399588, ECO:0007744|PDB:1AN9, ECO:0007744|PDB:1DDO, ECO:0007744|PDB:1EVI, ECO:0007744|PDB:1KIF, ECO:0007744|PDB:1VE9, ECO:0007744|PDB:3WGT, ECO:0007744|PDB:4YJD, ECO:0007744|PDB:4YJF, ECO:0007744|PDB:4YJG, ECO:0007744|PDB:4YJH, ECO:0007744|PDB:5WX2
ChainResidueDetails
ALEU316
BLEU316
CLEU316
DLEU316
ELEU316
FLEU316
GLEU316
HLEU316

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
AGLY313

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
BGLY313

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
CGLY313

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
DGLY313

site_idCSA5
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
EGLY313

site_idCSA6
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
FGLY313

site_idCSA7
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
GGLY313

site_idCSA8
Number of Residues1
DetailsAnnotated By Reference To The Literature 1c0k
ChainResidueDetails
HGLY313

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PDB entries from 2024-07-10

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