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1D8H

X-RAY CRYSTAL STRUCTURE OF YEAST RNA TRIPHOSPHATASE IN COMPLEX WITH SULFATE AND MANGANESE IONS.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004651molecular_functionpolynucleotide 5'-phosphatase activity
B0004651molecular_functionpolynucleotide 5'-phosphatase activity
C0004651molecular_functionpolynucleotide 5'-phosphatase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 550
ChainResidue
AGLU305
AGLU307
AGLU496
ASO4601
AHOH620
AHOH767

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 550
ChainResidue
BHOH618
BHOH641
BHOH713
BGLU305
BGLU307
BGLU496

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN C 550
ChainResidue
CGLU305
CGLU307
CGLU496
CSO4603
CHOH614
CHOH763

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 601
ChainResidue
AARG393
ALYS456
AARG458
AMN550
AHOH779

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 602
ChainResidue
BASP377
BARG393
BLYS409
BLYS456
BARG458
BHOH618
BHOH664
BHOH787

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 603
ChainResidue
CARG393
CLYS409
CLYS456
CARG458
CMN550

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsSITE: Essential for dimer formation
ChainResidueDetails
AASP280
BASP280
CASP280

Catalytic Information from CSA
site_idCSA1
Number of Residues3
Detailsa catalytic site defined by CSA, PubMed 10589681, 16887207
ChainResidueDetails
ALYS456
AARG393
ALYS409

site_idMCSA1
Number of Residues6
DetailsM-CSA 486
ChainResidueDetails
AGLU305metal ligand
AGLU307metal ligand
AARG393electrostatic stabiliser
ALYS409electrostatic stabiliser
ALYS456electrostatic stabiliser
AGLU496metal ligand

site_idMCSA2
Number of Residues6
DetailsM-CSA 486
ChainResidueDetails
BGLU305metal ligand
BGLU307metal ligand
BARG393electrostatic stabiliser
BLYS409electrostatic stabiliser
BLYS456electrostatic stabiliser
BGLU496metal ligand

site_idMCSA3
Number of Residues6
DetailsM-CSA 486
ChainResidueDetails
CGLU305metal ligand
CGLU307metal ligand
CARG393electrostatic stabiliser
CLYS409electrostatic stabiliser
CLYS456electrostatic stabiliser
CGLU496metal ligand

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PDB entries from 2024-07-31

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