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1D5A

CRYSTAL STRUCTURE OF AN ARCHAEBACTERIAL DNA POLYMERASE D.TOK. DEPOSITION OF SECOND NATIVE STRUCTURE AT 2.4 ANGSTROM

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0004527molecular_functionexonuclease activity
A0006260biological_processDNA replication
A0046872molecular_functionmetal ion binding
A0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 4004
ChainResidue
APRO94
AARG97
AASP113

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 4091
ChainResidue
ATYR7
AGLN91
APRO115
APHE116
AHOH3050

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 4130
ChainResidue
AARG335
AARG482
AHOH3022
AHOH3024
AGLY131

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 4487
ChainResidue
ATYR405
ALYS406
ASER407
AASN491
AHOH3061
ASO44587

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 4606
ChainResidue
APHE545
AGLU580
ATYR583
ATYR594
ATHR604

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 4730
ChainResidue
ALYS188
AHOH3053
AHOH3054

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 4787
ChainResidue
ALYS464
ALYS468
AARG746
AHOH3035

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 4706
ChainResidue
AGLU609

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 4587
ChainResidue
ALYS406
AARG460
ALYS464
ALYS487
ASO44487

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 5030
ChainResidue
AASP141
AGLU143
AASP315
AMG5031

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 5031
ChainResidue
AASP141
AMG5030

Functional Information from PROSITE/UniProt
site_idPS00116
Number of Residues9
DetailsDNA_POLYMERASE_B DNA polymerase family B signature. YADTDGFFA
ChainResidueDetails
ATYR538-ALA546

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:10545321
ChainResidueDetails
AASP141
AGLU143
AASP315

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PDB entries from 2024-07-24

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